Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LKZ96_RS22150 Genome accession   NZ_CP085860
Coordinates   4661320..4661853 (-) Length   177 a.a.
NCBI ID   WP_025304438.1    Uniprot ID   -
Organism   Serratia marcescens strain MV-u1-SK1-O     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4656320..4666853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKZ96_RS22115 (LKZ96_22145) - 4656661..4657068 (-) 408 WP_025304432.1 VOC family protein -
  LKZ96_RS22120 (LKZ96_22150) - 4657116..4657784 (-) 669 WP_025304433.1 glutathione S-transferase family protein -
  LKZ96_RS22125 (LKZ96_22155) - 4657781..4658224 (-) 444 WP_127146307.1 lipocalin-like domain-containing protein -
  LKZ96_RS22130 (LKZ96_22160) bhsA 4658420..4658680 (+) 261 WP_025304435.1 multiple stress resistance protein BhsA -
  LKZ96_RS22135 (LKZ96_22165) - 4658830..4659579 (+) 750 WP_213928143.1 3-oxoacyl-ACP reductase family protein -
  LKZ96_RS22140 (LKZ96_22170) - 4659844..4660056 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  LKZ96_RS22145 (LKZ96_22175) - 4660170..4661234 (+) 1065 WP_237651423.1 cyclase family protein -
  LKZ96_RS22150 (LKZ96_22180) ssb 4661320..4661853 (-) 534 WP_025304438.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LKZ96_RS22155 (LKZ96_22185) uvrA 4662131..4664959 (+) 2829 WP_025304439.1 excinuclease ABC subunit UvrA -
  LKZ96_RS22160 (LKZ96_22190) - 4665189..4666241 (+) 1053 WP_025304440.1 NAD(P)-dependent alcohol dehydrogenase -
  LKZ96_RS22165 (LKZ96_22195) maa 4666273..4666830 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18754.70 Da        Isoelectric Point: 5.2456

>NTDB_id=620897 LKZ96_RS22150 WP_025304438.1 4661320..4661853(-) (ssb) [Serratia marcescens strain MV-u1-SK1-O]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=620897 LKZ96_RS22150 WP_025304438.1 4661320..4661853(-) (ssb) [Serratia marcescens strain MV-u1-SK1-O]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGACCGATCAGTCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.763
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492