Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LJY22_RS06135 Genome accession   NZ_CP085843
Coordinates   1338862..1339449 (+) Length   195 a.a.
NCBI ID   WP_005393210.1    Uniprot ID   A0AAE4M4Z8
Organism   Vibrio diabolicus strain NV27     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333862..1344449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS06115 (LJY22_06110) panP 1333949..1335595 (-) 1647 WP_256936188.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  LJY22_RS06120 (LJY22_06115) - 1335795..1336307 (-) 513 WP_012841922.1 hypothetical protein -
  LJY22_RS06125 (LJY22_06120) - 1336514..1337419 (-) 906 WP_257897340.1 lysine exporter LysO family protein -
  LJY22_RS06130 (LJY22_06125) - 1337572..1338492 (-) 921 WP_005393212.1 HDOD domain-containing protein -
  LJY22_RS06135 (LJY22_06130) tfoX 1338862..1339449 (+) 588 WP_005393210.1 TfoX/Sxy family DNA transformation protein Regulator
  LJY22_RS06140 (LJY22_06135) - 1339640..1340188 (-) 549 WP_005393208.1 hypothetical protein -
  LJY22_RS06145 (LJY22_06140) - 1340478..1340975 (-) 498 WP_012841921.1 response regulator -
  LJY22_RS06150 (LJY22_06145) - 1340972..1342912 (-) 1941 WP_257897341.1 ATP-binding protein -
  LJY22_RS06155 (LJY22_06150) - 1343099..1344367 (+) 1269 WP_257897342.1 YdgA family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22436.75 Da        Isoelectric Point: 8.0901

>NTDB_id=620801 LJY22_RS06135 WP_005393210.1 1338862..1339449(+) (tfoX) [Vibrio diabolicus strain NV27]
MDMTDQAFFKYVRNFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLNCEKYKHVKKQTTATVNYYDV
TDLFESGYAGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKVAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=620801 LJY22_RS06135 WP_005393210.1 1338862..1339449(+) (tfoX) [Vibrio diabolicus strain NV27]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAACTTTAGTGAGTATCAAAAACGTTCTATGTTCGGTGGTAT
CGGTTTATTCACCGATGATGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGATTGGACG
AAGTGTTTACTCAACTGAATTGCGAAAAATATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGATGTA
ACAGATTTGTTTGAATCCGGATATGCAGGACTCGATGAACTGGTACAAAAATCAATTGAATACTCAATTAAGGAACGAAA
ATATCAAAAGTCTTCTGCCAGTAGACGTTTGAGAGATCTGCCAAATATGCAGTTAACTCTTGAGCGAATGGTCAAGAAAG
CAGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAGTGGCTTATGGCAAT
GACGTTGATGTTAAGTTGCTTTGGAAATTCGCTGGTGCAACTGACGGTGTTCATTGGAAACTGATTCAAGAGCCGCGTAA
AAAGCAGTTATTGGCGCTGTGTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio campbellii strain DS40M4

90.256

100

0.903
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

66.321

98.974

0.656
  tfoX Vibrio cholerae strain A1552

66.321

98.974

0.656
  tfoX Aliivibrio fischeri ES114

60.209

97.949

0.59