Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | N646_RS07805 | Genome accession | NC_022349 |
| Coordinates | 1737541..1738410 (+) | Length | 289 a.a. |
| NCBI ID | WP_017635919.1 | Uniprot ID | A0A2I3C9C8 |
| Organism | Vibrio alginolyticus NBRC 15630 = ATCC 17749 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1732541..1743410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N646_RS07785 (N646_1615) | nadC | 1732945..1733832 (+) | 888 | WP_017820396.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| N646_RS07790 (N646_1616) | - | 1734094..1734531 (+) | 438 | WP_017820395.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| N646_RS07795 (N646_1617) | pilB | 1734544..1736229 (+) | 1686 | WP_017820394.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| N646_RS07800 (N646_1618) | pilC | 1736253..1737476 (+) | 1224 | WP_017820393.1 | type II secretion system F family protein | Machinery gene |
| N646_RS07805 (N646_1619) | pilD | 1737541..1738410 (+) | 870 | WP_017635919.1 | A24 family peptidase | Machinery gene |
| N646_RS07810 (N646_1620) | coaE | 1738411..1739025 (+) | 615 | WP_017635920.1 | dephospho-CoA kinase | - |
| N646_RS07815 (N646_1621) | zapD | 1739053..1739793 (+) | 741 | WP_017820392.1 | cell division protein ZapD | - |
| N646_RS07820 (N646_1622) | yacG | 1739952..1740146 (+) | 195 | WP_017635922.1 | DNA gyrase inhibitor YacG | - |
| N646_RS07825 (N646_1623) | rplS | 1740611..1740964 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| N646_RS07830 (N646_1624) | trmD | 1741006..1741767 (-) | 762 | WP_005385420.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| N646_RS07835 (N646_1625) | rimM | 1741795..1742343 (-) | 549 | WP_005379964.1 | ribosome maturation factor RimM | - |
| N646_RS07840 (N646_1626) | rpsP | 1742373..1742621 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32563.76 Da Isoelectric Point: 6.8450
>NTDB_id=62027 N646_RS07805 WP_017635919.1 1737541..1738410(+) (pilD) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
Nucleotide
Download Length: 870 bp
>NTDB_id=62027 N646_RS07805 WP_017635919.1 1737541..1738410(+) (pilD) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAGCTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCTGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAGCTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCTGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
91.349 |
100 |
0.913 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
52.222 |
93.426 |
0.488 |
| pilD | Acinetobacter nosocomialis M2 |
51.852 |
93.426 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.653 |
95.848 |
0.457 |