Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   NW965_RS07725 Genome accession   NZ_CP102968
Coordinates   1631336..1632340 (-) Length   334 a.a.
NCBI ID   WP_258414698.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13-G-52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1626336..1637340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS07710 (NW965_07705) yajC 1628868..1629128 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  NW965_RS07715 (NW965_07710) tgt 1629147..1630286 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  NW965_RS07720 (NW965_07715) queA 1630309..1631334 (-) 1026 WP_001019179.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NW965_RS07725 (NW965_07720) ruvB 1631336..1632340 (-) 1005 WP_258414698.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NW965_RS07730 (NW965_07725) ruvA 1632372..1632974 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  NW965_RS07735 (NW965_07730) - 1632988..1633443 (-) 456 WP_000368902.1 ACT domain-containing protein -
  NW965_RS07740 (NW965_07735) obgE 1633456..1634748 (-) 1293 WP_000496098.1 GTPase ObgE -
  NW965_RS07745 (NW965_07740) rpmA 1635369..1635653 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  NW965_RS07750 (NW965_07745) - 1635665..1635985 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  NW965_RS07755 (NW965_07750) rplU 1635991..1636299 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  NW965_RS07760 (NW965_07755) mreD 1636535..1637065 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37645.94 Da        Isoelectric Point: 5.1844

>NTDB_id=620261 NW965_RS07725 WP_258414698.1 1631336..1632340(-) (ruvB) [Staphylococcus aureus strain 13-G-52]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLAYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=620261 NW965_RS07725 WP_258414698.1 1631336..1632340(-) (ruvB) [Staphylococcus aureus strain 13-G-52]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGCATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.644

97.605

0.641
  ruvB Streptococcus pneumoniae TIGR4

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae R6

57.576

98.802

0.569
  ruvB Streptococcus pneumoniae D39

57.576

98.802

0.569
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515