Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K7G91_RS06830 Genome accession   NZ_CP085791
Coordinates   1468369..1468881 (+) Length   170 a.a.
NCBI ID   WP_227797663.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D1250     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1463369..1473881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G91_RS06815 (K7G91_001362) rlmB 1463919..1464656 (+) 738 WP_227797661.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  K7G91_RS06820 (K7G91_001363) sodC 1464737..1465297 (-) 561 WP_049215281.1 superoxide dismutase family protein -
  K7G91_RS06825 (K7G91_001364) uvrA 1465370..1468201 (-) 2832 WP_227797662.1 excinuclease ABC subunit UvrA -
  K7G91_RS06830 (K7G91_001365) ssb 1468369..1468881 (+) 513 WP_227797663.1 single-stranded DNA-binding protein Machinery gene
  K7G91_RS06835 (K7G91_001366) - 1469031..1470311 (+) 1281 WP_109078052.1 site-specific integrase -
  K7G91_RS06840 (K7G91_001367) - 1470298..1471818 (+) 1521 WP_204352516.1 site-specific integrase -
  K7G91_RS06845 (K7G91_001368) - 1471821..1473857 (+) 2037 WP_227797664.1 integrase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19153.00 Da        Isoelectric Point: 5.2961

>NTDB_id=619971 K7G91_RS06830 WP_227797663.1 1468369..1468881(+) (ssb) [Pasteurella canis strain HL_D1250]
MAGVNKVIIVGNLGNDPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNDRPQAGGYAPQASAPQYNSPTSGSYGNNFSSQSNRPQHSAPQSEPPMD
MGFEEDNIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=619971 K7G91_RS06830 WP_227797663.1 1468369..1468881(+) (ssb) [Pasteurella canis strain HL_D1250]
ATGGCTGGAGTAAATAAAGTAATCATTGTGGGCAATTTAGGAAATGATCCTGAAATTCGCACAATGCCAAATGGCGACGC
TGTAGCGAATATTAGCGTTGCAACAAGCGAAAGCTGGATTGATAAAAATACTAACGAACGCCGTGAAATCACAGAATGGC
ATCGCATCGTATTCTATCGTCGTCAAGCTGAAGTGGCTGGAGAGTATTTACGTAAAGGCTCTAAAGTGTATGTAGAAGGA
CGCTTAAGAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTATACAACAGAGATTCAAGGCGATGTACTACAAAT
GCTAGACAGCCGCAATGATCGACCACAAGCAGGTGGTTACGCACCTCAAGCCTCTGCGCCACAATACAATTCGCCGACTA
GTGGCAGCTATGGTAATAACTTTAGCTCACAATCTAACCGTCCACAACACTCTGCACCACAAAGTGAGCCACCAATGGAC
ATGGGCTTTGAAGAAGATAATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.033

100

0.718
  ssb Vibrio cholerae strain A1552

53.977

100

0.559
  ssb Neisseria meningitidis MC58

42.614

100

0.441
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.435