Detailed information NTG0619938

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: NLHDIDDJ_RS05220
• Genome accession: NZ_CP085788
• Coordinates: 1080702..1081820 (-)
• Length: 372 a.a.
• NCBI ID: WP_228413886.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain RCH52
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1075702..1086820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLHDIDDJ_RS05190 (NLHDIDDJ_01024)	-	1076531..1077379 (+)	849	WP_000336551.1	class II glutamine amidotransferase	-
NLHDIDDJ_RS05195 (NLHDIDDJ_01025)	-	1077632..1078087 (+)	456	WP_000782976.1	bacteriohemerythrin	-
NLHDIDDJ_RS05200 (NLHDIDDJ_01026)	-	1078240..1079307 (+)	1068	WP_228413884.1	hypothetical protein	-
NLHDIDDJ_RS05205 (NLHDIDDJ_01027)	-	1079307..1079630 (+)	324	WP_000442588.1	RnfH family protein	-
NLHDIDDJ_RS05210 (NLHDIDDJ_01028)	-	1079685..1080083 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
NLHDIDDJ_RS05215 (NLHDIDDJ_01029)	fur	1080195..1080632 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
NLHDIDDJ_RS05220 (NLHDIDDJ_01030)	pilU	1080702..1081820 (-)	1119	WP_228413886.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
NLHDIDDJ_RS05225 (NLHDIDDJ_01031)	pilT	1081848..1082885 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
NLHDIDDJ_RS05230 (NLHDIDDJ_01032)	-	1083012..1083704 (+)	693	WP_228413888.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41959.16 Da
• Isoelectric Point: 6.6405

>NTDB_id=619938 NLHDIDDJ_RS05220 WP_228413886.1 1080702..1081820(-) (pilU) [Acinetobacter baumannii strain RCH52]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLYSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=619938 NLHDIDDJ_RS05220 WP_228413886.1 1080702..1081820(-) (pilU) [Acinetobacter baumannii strain RCH52]
ATGGATTTTAATGACCTGCTCAACCTGATGGTTGAAAAAAAATCATCGGATCTTTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAATGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTATATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTACAGTTACCACCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCCACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAAGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCCAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAGGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGAAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (30-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.926	100	0.772
pilU	Pseudomonas stutzeri DSM 10701	69.293	98.925	0.685
pilU	Vibrio cholerae strain A1552	52.973	99.462	0.527
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.775	93.011	0.398