Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NLHDIDDJ_RS01035 Genome accession   NZ_CP085788
Coordinates   222701..223831 (-) Length   376 a.a.
NCBI ID   WP_031947056.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 217701..228831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS01010 (NLHDIDDJ_00200) - 217876..218640 (-) 765 WP_000786955.1 AraC family transcriptional regulator -
  NLHDIDDJ_RS01015 (NLHDIDDJ_00201) - 218662..219876 (-) 1215 WP_000372838.1 MFS transporter -
  NLHDIDDJ_RS01020 (NLHDIDDJ_00202) - 220013..220663 (+) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  NLHDIDDJ_RS01025 (NLHDIDDJ_00203) - 220769..221689 (+) 921 WP_001994180.1 DMT family transporter -
  NLHDIDDJ_RS01030 (NLHDIDDJ_00204) - 222081..222650 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  NLHDIDDJ_RS01035 (NLHDIDDJ_00205) dprA 222701..223831 (-) 1131 WP_031947056.1 DNA-processing protein DprA Machinery gene
  NLHDIDDJ_RS01040 (NLHDIDDJ_00206) tsaP 223852..225006 (-) 1155 WP_213384357.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NLHDIDDJ_RS01045 (NLHDIDDJ_00207) def 225129..225659 (+) 531 WP_001196539.1 peptide deformylase -
  NLHDIDDJ_RS01050 (NLHDIDDJ_00208) - 225696..226124 (+) 429 WP_032060375.1 DUF2946 family protein -
  NLHDIDDJ_RS01055 (NLHDIDDJ_00209) - 226197..228302 (+) 2106 WP_228413624.1 TonB-dependent copper receptor -
  NLHDIDDJ_RS01060 (NLHDIDDJ_00210) - 228355..228561 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41830.35 Da        Isoelectric Point: 6.4984

>NTDB_id=619921 NLHDIDDJ_RS01035 WP_031947056.1 222701..223831(-) (dprA) [Acinetobacter baumannii strain RCH52]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=619921 NLHDIDDJ_RS01035 WP_031947056.1 222701..223831(-) (dprA) [Acinetobacter baumannii strain RCH52]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGACTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGTGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGTCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCCATTATTACGGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCAGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAGAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTAACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)

DprA winged helix domain (DprA_WH)

(328-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.404

100

0.984
  dprA Acinetobacter baumannii strain A118

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.604

100

0.715
  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38