Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT36_RS19345 Genome accession   NZ_CP085706
Coordinates   3904809..3905327 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain CK17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3904809..3914571 3904809..3905327 within 0


Gene organization within MGE regions


Location: 3904809..3914571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS19345 (LIT36_19355) ssbA 3904809..3905327 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  LIT36_RS19350 (LIT36_19360) rpsF 3905367..3905654 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  LIT36_RS19355 (LIT36_19365) ychF 3905766..3906866 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  LIT36_RS19360 (LIT36_19370) - 3906993..3909002 (-) 2010 WP_252206664.1 molybdopterin-dependent oxidoreductase -
  LIT36_RS19365 (LIT36_19375) - 3909049..3909255 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  LIT36_RS19370 (LIT36_19380) - 3909341..3910366 (-) 1026 WP_088005468.1 hypothetical protein -
  LIT36_RS19375 (LIT36_19385) - 3910656..3910997 (+) 342 WP_231040446.1 GNAT family N-acetyltransferase -
  LIT36_RS19380 (LIT36_19390) yyaC 3911172..3911786 (+) 615 WP_004392969.1 spore protease YyaC -
  LIT36_RS19385 (LIT36_19395) - 3911816..3912667 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein -
  LIT36_RS19390 (LIT36_19400) soj 3912660..3913421 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  LIT36_RS19395 (LIT36_19405) noc 3913720..3914571 (-) 852 WP_007409900.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=619460 LIT36_RS19345 WP_004392979.1 3904809..3905327(-) (ssbA) [Bacillus velezensis strain CK17]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=619460 LIT36_RS19345 WP_004392979.1 3904809..3905327(-) (ssbA) [Bacillus velezensis strain CK17]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378