Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LIT36_RS16795 Genome accession   NZ_CP085706
Coordinates   3394539..3395228 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CK17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3389539..3400228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS16760 (LIT36_16770) - 3389737..3390219 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LIT36_RS16765 (LIT36_16775) flgM 3390234..3390500 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIT36_RS16770 (LIT36_16780) - 3390570..3390989 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LIT36_RS16775 (LIT36_16785) comFC 3391063..3391752 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  LIT36_RS16780 (LIT36_16790) - 3391758..3392042 (-) 285 WP_022553866.1 competence protein ComFB -
  LIT36_RS16785 (LIT36_16795) comFA 3392100..3393485 (-) 1386 WP_243662307.1 DEAD/DEAH box helicase Machinery gene
  LIT36_RS16790 (LIT36_16800) - 3393593..3394441 (-) 849 WP_024085866.1 DegV family protein -
  LIT36_RS16795 (LIT36_16805) degU 3394539..3395228 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LIT36_RS16800 (LIT36_16810) degS 3395305..3396468 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LIT36_RS16805 (LIT36_16815) - 3396691..3397338 (+) 648 WP_252206629.1 YigZ family protein -
  LIT36_RS16810 (LIT36_16820) - 3397343..3398557 (+) 1215 WP_003151383.1 LCP family protein -
  LIT36_RS16815 (LIT36_16825) - 3398647..3399723 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=619452 LIT36_RS16795 WP_003219701.1 3394539..3395228(-) (degU) [Bacillus velezensis strain CK17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=619452 LIT36_RS16795 WP_003219701.1 3394539..3395228(-) (degU) [Bacillus velezensis strain CK17]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1