Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LIT36_RS16775 Genome accession   NZ_CP085706
Coordinates   3391063..3391752 (-) Length   229 a.a.
NCBI ID   WP_196758106.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3386063..3396752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS16740 (LIT36_16750) fliW 3386154..3386585 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  LIT36_RS16745 (LIT36_16755) - 3386615..3387184 (-) 570 WP_015387630.1 DUF6470 family protein -
  LIT36_RS16750 (LIT36_16760) flgL 3387275..3388192 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LIT36_RS16755 (LIT36_16765) flgK 3388204..3389721 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  LIT36_RS16760 (LIT36_16770) - 3389737..3390219 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LIT36_RS16765 (LIT36_16775) flgM 3390234..3390500 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIT36_RS16770 (LIT36_16780) - 3390570..3390989 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LIT36_RS16775 (LIT36_16785) comFC 3391063..3391752 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  LIT36_RS16780 (LIT36_16790) - 3391758..3392042 (-) 285 WP_022553866.1 competence protein ComFB -
  LIT36_RS16785 (LIT36_16795) comFA 3392100..3393485 (-) 1386 WP_243662307.1 DEAD/DEAH box helicase Machinery gene
  LIT36_RS16790 (LIT36_16800) - 3393593..3394441 (-) 849 WP_024085866.1 DegV family protein -
  LIT36_RS16795 (LIT36_16805) degU 3394539..3395228 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LIT36_RS16800 (LIT36_16810) degS 3395305..3396468 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25199.91 Da        Isoelectric Point: 8.4060

>NTDB_id=619450 LIT36_RS16775 WP_196758106.1 3391063..3391752(-) (comFC) [Bacillus velezensis strain CK17]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LCNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=619450 LIT36_RS16775 WP_196758106.1 3391063..3391752(-) (comFC) [Bacillus velezensis strain CK17]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTGTAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598