Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NW959_RS06760 Genome accession   NZ_CP102957
Coordinates   1441267..1441893 (+) Length   208 a.a.
NCBI ID   WP_001108889.1    Uniprot ID   Q7B2U9
Organism   Staphylococcus aureus strain 18-H-62     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1436267..1446893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW959_RS06725 (NW959_06725) - 1437251..1437583 (-) 333 WP_000516795.1 DUF4889 domain-containing protein -
  NW959_RS06730 (NW959_06730) - 1437667..1438812 (-) 1146 WP_000487144.1 class I SAM-dependent RNA methyltransferase -
  NW959_RS06740 (NW959_06740) gpsB 1439463..1439807 (-) 345 WP_258413014.1 cell division regulator GpsB -
  NW959_RS06745 (NW959_06745) - 1439821..1440384 (-) 564 WP_258413015.1 DUF1273 domain-containing protein -
  NW959_RS06750 (NW959_06750) - 1440377..1440727 (-) 351 WP_154283977.1 YppE family protein -
  NW959_RS06755 (NW959_06755) - 1440782..1440961 (-) 180 WP_001788819.1 hypothetical protein -
  NW959_RS06760 (NW959_06760) recU 1441267..1441893 (+) 627 WP_001108889.1 Holliday junction resolvase RecU Machinery gene
  NW959_RS06765 (NW959_06765) - 1441890..1444073 (+) 2184 WP_044289578.1 transglycosylase domain-containing protein -
  NW959_RS06770 (NW959_06770) - 1444292..1444636 (-) 345 WP_258413016.1 IS3 family transposase -
  NW959_RS06775 (NW959_06775) - 1444678..1444959 (-) 282 WP_258413017.1 transposase -
  NW959_RS06780 (NW959_06780) - 1445031..1445499 (-) 469 Protein_1326 IS30 family transposase -
  NW959_RS06785 (NW959_06785) - 1445599..1446129 (+) 531 WP_258472782.1 hypothetical protein -
  NW959_RS06790 (NW959_06790) - 1446145..1446468 (+) 324 WP_001058299.1 hypothetical protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.81 Da        Isoelectric Point: 9.7084

>NTDB_id=619451 NW959_RS06760 WP_001108889.1 1441267..1441893(+) (recU) [Staphylococcus aureus strain 18-H-62]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=619451 NW959_RS06760 WP_001108889.1 1441267..1441893(+) (recU) [Staphylococcus aureus strain 18-H-62]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7B2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529