Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJU29_RS03360 Genome accession   NZ_CP085684
Coordinates   745301..745864 (+) Length   187 a.a.
NCBI ID   WP_257111640.1    Uniprot ID   -
Organism   Pseudomonas ficuserectae strain ZJDX-003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 740301..750864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU29_RS03345 bfr 740374..740838 (+) 465 WP_002555461.1 bacterioferritin -
  LJU29_RS03350 uvrA 740933..743767 (-) 2835 WP_002555460.1 excinuclease ABC subunit UvrA -
  LJU29_RS03355 - 743897..745291 (+) 1395 WP_257111639.1 MFS transporter -
  LJU29_RS03360 ssb 745301..745864 (+) 564 WP_257111640.1 single-stranded DNA-binding protein Machinery gene
  LJU29_RS03365 - 745994..747106 (-) 1113 WP_257111641.1 endo-1,4-beta-xylanase -
  LJU29_RS03370 - 747106..747849 (-) 744 WP_005753240.1 inositol monophosphatase family protein -
  LJU29_RS03375 - 747846..748607 (-) 762 WP_257111642.1 glycerophosphoryl diester phosphodiesterase -
  LJU29_RS03380 - 748614..749720 (-) 1107 WP_257111643.1 ABC transporter ATP-binding protein -
  LJU29_RS03385 - 749717..750610 (-) 894 WP_005753237.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20846.02 Da        Isoelectric Point: 6.9835

>NTDB_id=619276 LJU29_RS03360 WP_257111640.1 745301..745864(+) (ssb) [Pseudomonas ficuserectae strain ZJDX-003]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTNKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQVDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=619276 LJU29_RS03360 WP_257111640.1 745301..745864(+) (ssb) [Pseudomonas ficuserectae strain ZJDX-003]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTAACAAGCAGAGCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTTGCCGAAATCGCTGGCGAATACCTACGTAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAAGTCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAAAACTACAACCAGCAGCCGCCACAA
CGCGACTCGCGCCCGGCGCCGCAACAGCAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.45

100

0.556
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.465
  ssb Neisseria meningitidis MC58

45.161

99.465

0.449
  ssb Neisseria gonorrhoeae MS11

45.161

99.465

0.449