Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VAPA_RS02275 Genome accession   NC_022247
Coordinates   494086..494637 (+) Length   183 a.a.
NCBI ID   WP_021005150.1    Uniprot ID   T1X3X5
Organism   Variovorax paradoxus B4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 489086..499637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAPA_RS02260 (VAPA_1c04540) - 489127..489882 (+) 756 WP_021005147.1 GntR family transcriptional regulator -
  VAPA_RS02265 (VAPA_1c04550) - 489890..490780 (-) 891 WP_021005148.1 DMT family transporter -
  VAPA_RS02270 (VAPA_1c04560) uvrA 490831..493938 (-) 3108 WP_021005149.1 excinuclease ABC subunit UvrA -
  VAPA_RS02275 (VAPA_1c04570) ssb 494086..494637 (+) 552 WP_021005150.1 single-stranded DNA-binding protein Machinery gene
  VAPA_RS02280 (VAPA_1c04580) - 494764..496752 (+) 1989 WP_021005151.1 sensor histidine kinase -
  VAPA_RS02285 (VAPA_1c04590) - 496765..497196 (-) 432 WP_021005152.1 GFA family protein -
  VAPA_RS02290 (VAPA_1c04600) - 497227..497940 (-) 714 WP_021005153.1 YebC/PmpR family DNA-binding transcriptional regulator -
  VAPA_RS02295 (VAPA_1c04610) - 498299..498679 (+) 381 WP_021005154.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19338.28 Da        Isoelectric Point: 5.9554

>NTDB_id=61926 VAPA_RS02275 WP_021005150.1 494086..494637(+) (ssb) [Variovorax paradoxus B4]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYAQGGGGGGYSQGSGGGGGYAPRAPAAAAPRAPA
PAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=61926 VAPA_RS02275 WP_021005150.1 494086..494637(+) (ssb) [Variovorax paradoxus B4]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAGATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGCGGCCCCGAGGACGACGGCGGCTACGCGCAGGGCGGCGGTGGCG
GCGGCTACTCGCAAGGCAGCGGTGGTGGCGGTGGCTACGCGCCCCGCGCACCGGCCGCGGCAGCACCGCGTGCTCCGGCG
CCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1X3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.403

100

0.557
  ssb Vibrio cholerae strain A1552

48.947

100

0.508
  ssb Neisseria gonorrhoeae MS11

46.196

100

0.464
  ssb Neisseria meningitidis MC58

45.652

100

0.459

Multiple sequence alignment