Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJQ72_RS17390 Genome accession   NZ_CP085633
Coordinates   3859280..3859822 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain TS20HJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3854280..3864822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJQ72_RS17370 (LJQ72_17370) cas6f 3854291..3854845 (+) 555 WP_180789301.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  LJQ72_RS17375 (LJQ72_17375) - 3855761..3856180 (-) 420 WP_227527257.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LJQ72_RS17380 (LJQ72_17380) uvrA 3856196..3859030 (-) 2835 WP_227527258.1 excinuclease ABC subunit UvrA -
  LJQ72_RS17385 (LJQ72_17385) - 3859105..3859299 (+) 195 WP_165572835.1 hypothetical protein -
  LJQ72_RS17390 (LJQ72_17390) ssb 3859280..3859822 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LJQ72_RS17395 (LJQ72_17395) - 3860443..3860724 (+) 282 WP_180789302.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=618987 LJQ72_RS17390 WP_039283288.1 3859280..3859822(+) (ssb) [Pectobacterium brasiliense strain TS20HJ1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=618987 LJQ72_RS17390 WP_039283288.1 3859280..3859822(+) (ssb) [Pectobacterium brasiliense strain TS20HJ1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461