Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW341_RS03590 Genome accession   NZ_CP102946
Coordinates   747901..748398 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain SCAID WND1-2022 (148)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 742901..753398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW341_RS03575 (NW341_03575) bfr 742910..743374 (+) 465 WP_033875787.1 bacterioferritin -
  NW341_RS03580 (NW341_03580) uvrA 743445..746282 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  NW341_RS03585 (NW341_03585) - 746496..747884 (+) 1389 WP_003103910.1 MFS transporter -
  NW341_RS03590 (NW341_03590) ssb 747901..748398 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  NW341_RS03595 (NW341_03595) - 748540..749757 (+) 1218 WP_033877387.1 site-specific integrase -
  NW341_RS03600 (NW341_03600) - 749750..751263 (+) 1514 Protein_708 site-specific integrase -
  NW341_RS03605 (NW341_03605) - 751256..753247 (+) 1992 WP_033877390.1 integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=618784 NW341_RS03590 WP_003114685.1 747901..748398(+) (ssb) [Pseudomonas aeruginosa strain SCAID WND1-2022 (148)]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=618784 NW341_RS03590 WP_003114685.1 747901..748398(+) (ssb) [Pseudomonas aeruginosa strain SCAID WND1-2022 (148)]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515