Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NWO26_RS07575 Genome accession   NZ_CP102797
Coordinates   1470064..1470654 (+) Length   196 a.a.
NCBI ID   WP_011680603.1    Uniprot ID   Q03MX8
Organism   Streptococcus thermophilus strain ST057-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465064..1475654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS07550 - 1466194..1466649 (-) 456 WP_011680598.1 DUF3021 domain-containing protein -
  NWO26_RS07555 - 1466646..1467037 (-) 392 Protein_1467 LytTR family DNA-binding domain-containing protein -
  NWO26_RS07560 - 1467261..1467566 (+) 306 WP_014621013.1 hypothetical protein -
  NWO26_RS07565 hexB 1467618..1469561 (+) 1944 WP_113870458.1 DNA mismatch repair endonuclease MutL Machinery gene
  NWO26_RS07570 - 1469691..1469912 (+) 222 WP_011680602.1 hypothetical protein -
  NWO26_RS07575 ruvA 1470064..1470654 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA Machinery gene
  NWO26_RS07580 - 1470661..1471215 (+) 555 WP_014621014.1 DNA-3-methyladenine glycosylase I -
  NWO26_RS07585 cinA 1471311..1472582 (+) 1272 WP_014621015.1 competence/damage-inducible protein A Machinery gene
  NWO26_RS07590 recA 1472618..1473757 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  NWO26_RS07595 spx 1473934..1474332 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.98 Da        Isoelectric Point: 5.2834

>NTDB_id=618324 NWO26_RS07575 WP_011680603.1 1470064..1470654(+) (ruvA) [Streptococcus thermophilus strain ST057-1]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=618324 NWO26_RS07575 WP_011680603.1 1470064..1470654(+) (ruvA) [Streptococcus thermophilus strain ST057-1]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03MX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444