Detailed information NTG0061814

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: GDK21_RS08605
• Genome accession: NZ_AP019542
• Coordinates: 1749210..1749812 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271550.1
• Uniprot ID: P66748
• Organism: Staphylococcus aureus strain KG-03
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1744210..1754812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GDK21_RS08585 (SAKG03_16140)	yajC	1745706..1745966 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
GDK21_RS08590 (SAKG03_16150)	tgt	1745985..1747124 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
GDK21_RS08595 (SAKG03_16160)	queA	1747147..1748172 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
GDK21_RS08600 (SAKG03_16170)	ruvB	1748174..1749178 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GDK21_RS08605 (SAKG03_16180)	ruvA	1749210..1749812 (-)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
GDK21_RS08610 (SAKG03_16190)	-	1749826..1750281 (-)	456	WP_000368902.1	ACT domain-containing protein	-
GDK21_RS08615 (SAKG03_16200)	obgE	1750294..1751586 (-)	1293	WP_000496100.1	GTPase ObgE	-
GDK21_RS08620 (SAKG03_16210)	rpmA	1751940..1752224 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
GDK21_RS08625 (SAKG03_16220)	-	1752236..1752556 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
GDK21_RS08630 (SAKG03_16230)	rplU	1752562..1752870 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
GDK21_RS08635 (SAKG03_16240)	mreD	1753106..1753636 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
GDK21_RS08640 (SAKG03_16250)	mreC	1753636..1754478 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
GDK21_RS08645 (SAKG03_16260)	-	1754677..1754796 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22281.50 Da
• Isoelectric Point: 6.1244

>NTDB_id=61814 GDK21_RS08605 WP_000271550.1 1749210..1749812(-) (ruvA) [Staphylococcus aureus strain KG-03]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=61814 GDK21_RS08605 WP_000271550.1 1749210..1749812(-) (ruvA) [Staphylococcus aureus strain KG-03]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (156-197)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: P66748

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.216	99.5	0.43