Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT34_RS08780 Genome accession   NZ_CP085431
Coordinates   1737371..1738402 (-) Length   343 a.a.
NCBI ID   WP_064471539.1    Uniprot ID   -
Organism   Priestia megaterium strain F20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732371..1743402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT34_RS08760 (LIT34_08770) - 1732784..1733590 (+) 807 WP_013056442.1 carbon-nitrogen family hydrolase -
  LIT34_RS08765 (LIT34_08775) - 1734159..1734752 (+) 594 WP_013056443.1 hypothetical protein -
  LIT34_RS08770 (LIT34_08780) speG 1735045..1735569 (-) 525 WP_013056444.1 spermidine N1-acetyltransferase -
  LIT34_RS08775 (LIT34_08785) - 1735745..1737067 (+) 1323 WP_063671206.1 DUF1565 domain-containing protein -
  LIT34_RS08780 (LIT34_08790) recA 1737371..1738402 (-) 1032 WP_064471539.1 recombinase RecA Machinery gene
  LIT34_RS08785 (LIT34_08795) - 1738399..1738593 (-) 195 WP_041816525.1 hypothetical protein -
  LIT34_RS08790 (LIT34_08800) arsC 1738896..1739318 (-) 423 WP_013056447.1 arsenate reductase (thioredoxin) -
  LIT34_RS08795 (LIT34_08805) - 1739343..1740641 (-) 1299 WP_013056448.1 arsenical efflux pump membrane protein ArsB -
  LIT34_RS08800 (LIT34_08810) - 1740660..1741007 (-) 348 WP_013056449.1 metalloregulator ArsR/SmtB family transcription factor -
  LIT34_RS08805 (LIT34_08815) - 1741415..1741744 (+) 330 WP_029324433.1 metalloregulator ArsR/SmtB family transcription factor -
  LIT34_RS08810 (LIT34_08820) - 1741795..1742229 (+) 435 WP_013056451.1 ArsI/CadI family heavy metal resistance metalloenzyme -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37557.70 Da        Isoelectric Point: 5.3734

>NTDB_id=618077 LIT34_RS08780 WP_064471539.1 1737371..1738402(-) (recA) [Priestia megaterium strain F20]
MNDKKAALDMALKQIEKQFGTGSIIKMGEGTHTKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGRENAKIFLKENPEIREEIRKR
IIDFKYSDNVNNDNDNDSEKENQ

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=618077 LIT34_RS08780 WP_064471539.1 1737371..1738402(-) (recA) [Priestia megaterium strain F20]
ATGAATGATAAAAAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGATCAATTATTAAAAT
GGGAGAAGGCACACATACAAAAGTTGAGGCATCTAGCTCAGGCTCATTAGCTTTAGATATAGCTCTTGGAATTAATGGTT
ATCCCAAGGGAAGAATTATGGAAGTTTACGGGCCCGAAAGTTCAGGTAAAACAACCGTTTCCTTACACGCAATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCACTTGATCCGGTTTATGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTATCTCAACCAGATACTGGTGAACAGGCACTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCACAAAAAGAAATTGAAGGAGAAATGGGAGATTCT
CACGTAGGTTTACAAGCTCGTTTGATGTCTCAAGCTCTTCGTAAACTATCTGGAGCAATCAATAAGTCTAAAACCATTGC
CATCTTCATCAACCAAATCAGGGAGAAAGTAGGCGTTATGTTTGGAAATCCGGAAACAACGCCAGGTGGAAGAGCACTAA
AATTCTATTCTTCCGTTCGTCTGGAGGTTCGCCGCGCTGAACAACTAAAACTCGGAAATGACATAGTTGGTAATAAAACA
AGAATTAAAGTAGTCAAAAATAAAATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGAGAAATCTTAGATATCGGCTCTGAAGTAGACATTGTTCAAAAGTCTGGATCTTGGTTTTCATATAATGAGG
AGCGTTTAGGACAGGGACGAGAAAACGCTAAGATTTTCTTAAAAGAAAACCCTGAAATTAGAGAAGAAATTAGAAAAAGA
ATTATTGATTTCAAATATAGTGATAATGTTAATAACGATAACGATAACGATAGCGAAAAAGAAAACCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.979

95.918

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

72.812

93.294

0.679
  recA Streptococcus pneumoniae TIGR4

64.957

100

0.665
  recA Streptococcus pneumoniae Rx1

64.957

100

0.665
  recA Streptococcus pneumoniae D39

64.957

100

0.665
  recA Streptococcus pneumoniae R6

64.957

100

0.665
  recA Streptococcus mitis NCTC 12261

68.731

94.169

0.647
  recA Streptococcus mitis SK321

68.421

94.169

0.644
  recA Streptococcus pyogenes NZ131

67.593

94.461

0.638
  recA Streptococcus mutans UA159

67.593

94.461

0.638
  recA Neisseria gonorrhoeae strain FA1090

61.561

100

0.621
  recA Neisseria gonorrhoeae MS11

61.561

100

0.621
  recA Neisseria gonorrhoeae MS11

61.561

100

0.621
  recA Lactococcus lactis subsp. cremoris KW2

66.458

93.003

0.618
  recA Acinetobacter baylyi ADP1

64.596

93.878

0.606
  recA Acinetobacter baumannii D1279779

64.577

93.003

0.601
  recA Vibrio cholerae strain A1552

63.95

93.003

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

93.003

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

93.586

0.592
  recA Helicobacter pylori strain NCTC11637

63.125

93.294

0.589
  recA Glaesserella parasuis strain SC1401

63.522

92.711

0.589
  recA Helicobacter pylori 26695

62.813

93.294

0.586
  recA Pseudomonas stutzeri DSM 10701

63.009

93.003

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.656

95.044

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.147

89.504

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.19

93.586

0.554