Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT28_RS27625 Genome accession   NZ_CP085409
Coordinates   5359751..5360272 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5354751..5365272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS27605 (LIT28_27630) rplI 5355960..5356406 (-) 447 WP_060633062.1 50S ribosomal protein L9 -
  LIT28_RS27610 (LIT28_27635) - 5356403..5358376 (-) 1974 WP_242254056.1 DHH family phosphoesterase -
  LIT28_RS27615 (LIT28_27640) - 5358455..5359390 (-) 936 WP_242254054.1 YybS family protein -
  LIT28_RS27620 (LIT28_27645) rpsR 5359472..5359705 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  LIT28_RS27625 (LIT28_27650) ssbA 5359751..5360272 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  LIT28_RS27630 (LIT28_27655) rpsF 5360299..5360589 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  LIT28_RS27635 (LIT28_27660) ychF 5360781..5361881 (-) 1101 WP_242254052.1 redox-regulated ATPase YchF -
  LIT28_RS27640 (LIT28_27665) - 5361997..5362194 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  LIT28_RS27645 (LIT28_27670) - 5362215..5363096 (-) 882 WP_242254050.1 mechanosensitive ion channel family protein -
  LIT28_RS27650 (LIT28_27675) yyaC 5363356..5363952 (+) 597 WP_242254048.1 spore protease YyaC -
  LIT28_RS27655 (LIT28_27680) spo0J 5363973..5364824 (-) 852 WP_080468614.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=617895 LIT28_RS27625 WP_000981963.1 5359751..5360272(-) (ssbA) [Bacillus thuringiensis strain KF1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=617895 LIT28_RS27625 WP_000981963.1 5359751..5360272(-) (ssbA) [Bacillus thuringiensis strain KF1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCGGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382