Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAIN_RS07995 Genome accession   NC_022244
Coordinates   1623935..1624426 (-) Length   163 a.a.
NCBI ID   WP_021002092.1    Uniprot ID   A0A0P0NAS0
Organism   Streptococcus anginosus C1051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1618935..1629426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS07980 (SAIN_1549) - 1621842..1622786 (+) 945 WP_003026319.1 magnesium transporter CorA family protein -
  SAIN_RS07985 (SAIN_1550) - 1622802..1623479 (+) 678 WP_021002091.1 DUF1129 domain-containing protein -
  SAIN_RS07990 (SAIN_1551) rpsR 1623659..1623898 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SAIN_RS07995 (SAIN_1552) ssb 1623935..1624426 (-) 492 WP_021002092.1 single-stranded DNA-binding protein Machinery gene
  SAIN_RS08000 (SAIN_1553) rpsF 1624438..1624728 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  SAIN_RS08005 (SAIN_1554) - 1624996..1626038 (+) 1043 Protein_1550 GtrA family protein -
  SAIN_RS08010 (SAIN_1555) - 1626035..1626940 (+) 906 WP_021002094.1 phosphodiester glycosidase family protein -
  SAIN_RS08015 (SAIN_1556) - 1626915..1627325 (+) 411 WP_021002095.1 hypothetical protein -
  SAIN_RS08020 (SAIN_1557) - 1627558..1628163 (-) 606 WP_021002096.1 histidine phosphatase family protein -
  SAIN_RS08025 (SAIN_1558) - 1628175..1629017 (-) 843 WP_021002097.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18231.94 Da        Isoelectric Point: 4.9008

>NTDB_id=61786 SAIN_RS07995 WP_021002092.1 1623935..1624426(-) (ssb) [Streptococcus anginosus C1051]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGNSSSNFGNSTSVNQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=61786 SAIN_RS07995 WP_021002092.1 1623935..1624426(-) (ssb) [Streptococcus anginosus C1051]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTGATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGACAATTTCCAACTGCTAGAAAGCCGTGC
CAGCCGTGAAGGTCAATCTTCTGGTGGCTACACTTCTAATAACTTCGGAAATTCGTCTTCCAATTTTGGGAACTCAACTT
CTGTCAATCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGCAATACCAATCCAATGGATATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0NAS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment