Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SAIN_RS02215 Genome accession   NC_022244
Coordinates   443501..444160 (-) Length   219 a.a.
NCBI ID   WP_021001379.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438501..449160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS02195 (SAIN_0429) - 439545..440111 (+) 567 WP_021001376.1 YutD family protein -
  SAIN_RS02200 (SAIN_0430) rlmN 440145..441227 (+) 1083 WP_021001377.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SAIN_RS02205 (SAIN_0431) - 441220..441750 (+) 531 WP_003025737.1 VanZ family protein -
  SAIN_RS02210 (SAIN_0432) trpB 442135..443331 (+) 1197 WP_021001378.1 tryptophan synthase subunit beta -
  SAIN_RS02215 (SAIN_0433) cclA/cilC 443501..444160 (-) 660 WP_021001379.1 prepilin peptidase Machinery gene
  SAIN_RS02220 (SAIN_0434) - 444311..444838 (+) 528 WP_003070162.1 Dps family protein -
  SAIN_RS02225 - 445103..445327 (+) 225 WP_003070161.1 YqgQ family protein -
  SAIN_RS02230 (SAIN_0435) - 445321..445701 (+) 381 WP_003070160.1 rhodanese-like domain-containing protein -
  SAIN_RS02235 (SAIN_0436) - 445722..446447 (-) 726 WP_003070158.1 16S rRNA pseudouridine(516) synthase -
  SAIN_RS02240 (SAIN_0437) typA 446628..448469 (+) 1842 WP_003070156.1 translational GTPase TypA -
  SAIN_RS02245 (SAIN_0438) - 448534..448818 (+) 285 WP_003025714.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24773.17 Da        Isoelectric Point: 8.3380

>NTDB_id=61751 SAIN_RS02215 WP_021001379.1 443501..444160(-) (cclA/cilC) [Streptococcus anginosus C1051]
MIHFYFFLVGSIVASFLGLVVDRFPEQSIITPASHCNVCGQKLAPRDLIPVLSQLINRLRCRFCNSKIPIRYILLELTGG
CLFLATSLGYLNINRLVLLAMGMTLSLYDQREQEYPLLIWLIFHIFLLFLTSFNLLMVAFLALGILAHFVDLRIGAGDFL
FLASCSTVFKLTEILWLIQIASLVGLCLFCLKKRKDRIAFVPCLLIGVIVLLLCELLLQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=61751 SAIN_RS02215 WP_021001379.1 443501..444160(-) (cclA/cilC) [Streptococcus anginosus C1051]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGTATTGTAGCTTCCTTTTTAGGACTGGTCGTTGATCGCTTTCCTGAACA
GTCTATTATCACACCTGCTAGTCATTGCAACGTTTGTGGACAGAAATTAGCACCTCGTGATTTAATTCCTGTTCTTTCAC
AGCTTATCAATCGGCTGCGTTGCCGTTTTTGCAACTCAAAAATTCCCATCCGTTACATCCTTCTAGAACTAACTGGTGGC
TGTCTCTTTCTTGCAACATCTTTAGGTTATCTAAACATCAACCGGCTCGTTTTGCTTGCAATGGGAATGACCTTATCCCT
TTATGATCAAAGAGAACAAGAATATCCTCTCCTCATCTGGTTAATCTTTCATATTTTTCTCCTTTTTTTGACAAGCTTCA
ATCTTTTAATGGTTGCTTTTTTAGCACTTGGGATTTTGGCTCACTTCGTTGATTTACGTATCGGTGCAGGAGACTTTCTT
TTTCTGGCATCTTGTTCAACTGTTTTCAAGTTGACAGAGATTCTTTGGCTGATTCAAATTGCCAGCTTAGTGGGCTTATG
TCTCTTTTGCTTAAAAAAGAGAAAAGACAGGATAGCTTTCGTTCCCTGTCTTTTGATTGGAGTGATTGTTCTGCTTTTAT
GCGAACTGTTGCTTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

58.716

99.543

0.584
  cclA/cilC Streptococcus mitis NCTC 12261

58.257

99.543

0.58
  cclA/cilC Streptococcus pneumoniae TIGR4

57.339

99.543

0.571
  cclA/cilC Streptococcus pneumoniae Rx1

57.339

99.543

0.571
  cclA/cilC Streptococcus pneumoniae D39

57.339

99.543

0.571
  cclA/cilC Streptococcus pneumoniae R6

57.339

99.543

0.571

Multiple sequence alignment