Detailed information NTG0617469

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LIT27_RS21780
• Genome accession: NZ_CP085392
• Coordinates: 4227202..4229628 (-)
• Length: 808 a.a.
• NCBI ID: WP_071156914.1
• Uniprot ID: -
• Organism: Cytobacillus oceanisediminis strain CK22
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4222202..4234628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIT27_RS21750 (LIT27_21790)	-	4224604..4225692 (-)	1089	WP_019382894.1	AI-2E family transporter	-
LIT27_RS21755 (LIT27_21795)	-	4225849..4225983 (-)	135	WP_083390473.1	YrzQ family protein	-
LIT27_RS21760 (LIT27_21800)	-	4226008..4226199 (-)	192	WP_009333064.1	hypothetical protein	-
LIT27_RS21765 (LIT27_21805)	-	4226215..4226685 (-)	471	WP_009333065.1	PRC-barrel domain-containing protein	-
LIT27_RS21770 (LIT27_21810)	-	4226787..4226939 (-)	153	WP_009333066.1	hypothetical protein	-
LIT27_RS21775 (LIT27_21815)	-	4226977..4227138 (-)	162	WP_019382896.1	hypothetical protein	-
LIT27_RS21780 (LIT27_21820)	recD2	4227202..4229628 (-)	2427	WP_071156914.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LIT27_RS21785 (LIT27_21825)	-	4229653..4230318 (-)	666	WP_019382898.1	tetratricopeptide repeat protein	-
LIT27_RS21790 (LIT27_21830)	mnmA	4230434..4231549 (-)	1116	WP_019382899.1	tRNA 2-thiouridine(34) synthase MnmA	-
LIT27_RS21795 (LIT27_21835)	-	4231606..4232748 (-)	1143	WP_009333071.1	cysteine desulfurase family protein	-
LIT27_RS21800 (LIT27_21840)	-	4232817..4233236 (-)	420	WP_009333072.1	Rrf2 family transcriptional regulator	-
LIT27_RS21805 (LIT27_21845)	-	4233236..4233922 (-)	687	WP_009333073.1	YitT family protein	-

Sequence

Protein

• Length: 808 a.a.
• Molecular weight: 91330.47 Da
• Isoelectric Point: 4.9779

>NTDB_id=617469 LIT27_RS21780 WP_071156914.1 4227202..4229628(-) (recD2) [Cytobacillus oceanisediminis strain CK22]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEQETYIFYGEFKDHPKFG
VQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDKVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQSNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILEM
ESMQAGHVYTEAKPLLQSVKKLLEENKRDSIEYRDISNELIKLEEEGKIMAEGQKIYLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQTDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGTRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAIPLNGETIQEDTAELSLPETLTLEERLLQADPMIGMGNITPY
DFMEKEYS

Nucleotide

• Length: 2427 bp

>NTDB_id=617469 LIT27_RS21780 WP_071156914.1 4227202..4229628(-) (recD2) [Cytobacillus oceanisediminis strain CK22]
ATGGAGAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGAAAGTTCATAAAAGGCAGACATCTTGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGAATCCGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACAGGTTATCTGCCAAAGATGCATGAGCAGGAAACGTATATTTTCTACGGTGAATTCAAGGATCACCCTAAGTTCGGT
GTCCAATTCCACGCAAGCCATTACCGGAAAGATCTTCCCCAGACCAAACAAGGTGTAGCCAATTATTTATCAAGCGAATT
ATTTAAAGGGATTGGAAAGAAAACCGCCGAGCAAATCGTTGAAACACTTGGCGAAGATGCGATTACACGCATTCTGAATC
AGCCGTCTCTTCTCGATAAGGTTCCAAAACTGTCACCTGAAAAAGCAAAATTGCTTTACGACACGCTTATGGAACATCAA
GGCCTTGAGCAAGCCATGATTGCGCTAAATCAATATGGTTTTGGTCCGCAGCTTTCCATGAGAATTTATCAAGTATATAA
AGAAATGACGATTGAAGTCGTCCAAAGCAATCCGTATAAGCTGGTTGAGGATATAGAAGGAGTCGGCTTTGGCCGTGCAG
ATGAACTGGGATATCAAATCGGCATATCAGGTAATCATCCTGATCGTATTAAAGCAGCCTGCCTCTACATACTTGAAATG
GAAAGCATGCAGGCAGGCCATGTTTATACTGAAGCAAAACCTCTTCTGCAAAGTGTGAAGAAGCTTTTAGAAGAAAATAA
GCGTGATAGCATTGAATACAGGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAAATCATGGCTGAAGGCC
AAAAAATATACCTTCCATCCCTTTACTTTTCTGAAAAGGGACTTGTAACCAATATTAAACGGATCCTTAAACAAACACAA
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGCAATCTGGAGGAACGTCTGGGTGTTCAGTACGCCCC
GACCCAAAAAGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATACTGACTGGCGGCCCTGGTACAGGAAAAACAA
CCGTTATTAAAGGAATTGTTGAGTTATATGCCGAACTGCATGGCTGCTCCCTGGAGCCAAAAGACTATAAAAAGGAAGAG
CCTTTTCCCTTCCTGCTGGCTGCGCCTACAGGAAGGGCTGCAAAACGGATGGCCGAGTCAACAGGGCTGCCTGCGGTAAC
CATTCACCGCCTGCTTGGCTGGAATGGGACCGAAGGGTTTGACCGGCATGAAGAGAGTCCATTGGAAGGCAGGATTTTAA
TTGTAGATGAGACATCAATGGTTGATGTTTGGCTTGCTAATCAGCTTTTCAAGGCTCTCCCTGAAAATATGCAGGTGATC
CTTGTGGGGGATGAAGATCAGCTGCCCTCAGTGGGGCCAGGCCAGGTTTTAAAAGATCTTTTGCGTTCAGAACGTATTCC
TACCGTTCGTTTAACAGATATATACAGGCAGGCTGAAGGATCCTCAATCATTGAATTGGCTCATGAAATGAAAAAAGGCA
AACTTCCGGCGAACATTTCTGCACAGCAGACAGATCGTTCCTTTATCAAATGCCAGCCGGGCCAAATTGCGGATGTTGTT
GAAAAAGTTGTTCTGAATGCCAAGAAGAAAGGTTATTCTTCAAAAGATATTCAGGTGCTTGCCCCTATGTACCGCGGACC
TGCAGGAATTGACAGGCTAAACGAAATATTGCAGGAAATACTAAATCCAAATCCTGATGGAACGAGAAAAGAGCTGTCCT
TCGGTGATGTGAAATACAGAATCGGCGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAGAATAATGTGTTTAATGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTCGATGGTGC
AGAAGCTACTTATACAAGGCAGGATCTTAATCAGATCACACATGCCTACTGCTGTTCAGTCCATAAATCCCAGGGAAGTG
AATTCCCTATCGTCATTTTGCCAATTGTTAAAAGCTATTACAGGATGCTTAGGAGAAATCTTCTTTATACCGCCATTACC
CGCAGCAGACAGTTTTTGATACTGTGCGGTGAAGAAGATGCGTTGAAAATCGGTGTGGAACGTGCGGATGAACAGGCCCG
ACTGACAACTCTTTCAGAAAAGCTTAGAGATGCCATTCCATTAAATGGTGAAACAATACAGGAAGATACAGCAGAGTTAT
CCCTGCCTGAAACCTTAACCCTTGAAGAAAGGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (345-552)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.108	98.639	0.613