Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIT27_RS21875 Genome accession   NZ_CP085392
Coordinates   4248761..4251130 (-) Length   789 a.a.
NCBI ID   WP_252245322.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain CK22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4243761..4256130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS21860 (LIT27_21900) dtd 4245312..4245752 (-) 441 WP_009333083.1 D-aminoacyl-tRNA deacylase -
  LIT27_RS21865 (LIT27_21905) - 4245767..4247962 (-) 2196 WP_019382910.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIT27_RS21870 (LIT27_21910) - 4248258..4248770 (-) 513 WP_009333085.1 adenine phosphoribosyltransferase -
  LIT27_RS21875 (LIT27_21915) recJ 4248761..4251130 (-) 2370 WP_252245322.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIT27_RS21880 (LIT27_21920) - 4251293..4251610 (-) 318 WP_019382912.1 lipopolysaccharide assembly LapA domain-containing protein -
  LIT27_RS21885 (LIT27_21925) - 4251635..4252537 (-) 903 WP_009333088.1 cation diffusion facilitator family transporter -
  LIT27_RS21890 (LIT27_21930) secDF 4252678..4254942 (-) 2265 WP_019382913.1 protein translocase subunit SecDF -
  LIT27_RS21895 (LIT27_21935) - 4255248..4255544 (-) 297 WP_019382914.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88149.47 Da        Isoelectric Point: 5.0957

>NTDB_id=617470 LIT27_RS21875 WP_252245322.1 4248761..4251130(-) (recJ) [Cytobacillus oceanisediminis strain CK22]
MLHSRTRWIVRQTQEDKVQQLSKELNISPLAASLLINRGMDTVDSARYFLLDKDQEFHDPFLMTDMAKAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEQAADTGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGHELPEAWAIVHPKHPESTYPFRELAGVGVAFKLAHALYGEMPDHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLKALFKAAGIELPSINEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAIAEEIEMLNKE
RQAIVNDIAAQAVKEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSDKGLAKGSARSIKGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIESVDDLRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMQLLAPFGM
GNPKPKVLIKEANIAAMRKIGSDQTHIKVTIENDGSSLDGIGFGLGHLHEQISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPDVNTTWIFFNEEHISKFRTYAGESMVKISSEEDAEALKLDGSNIVLADMPPSKE
MLAHVFSGKNPARIYAHFYKEDSDYFSTIPTRDHFKWYFALLAKKGSVDIRRHGNDIAKHKGWSRETVDFMSQVFFELDF
VKINNGVISLNNTSIKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=617470 LIT27_RS21875 WP_252245322.1 4248761..4251130(-) (recJ) [Cytobacillus oceanisediminis strain CK22]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACACAGGAGGATAAGGTGCAGCAGCTTTCAAAGGAATTGAATAT
TTCTCCACTGGCCGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTTTATTGGATAAAG
ACCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAAAAGCTGTTTCCAGAATAAAAGAAGCAATTGAAAAACAG
GAACCTATCTTAATTTTTGGTGATTATGATGCGGATGGAGTGACAAGCACTTCTGTCATGATGATGGCACTTAGAGATCT
CGGTGCTGACGTCCAATTCTACATACCGAATCGATTTACTGAAGGTTATGGACCAAATATCCCGGCTTTTGAACAAGCCG
CTGATACTGGCATCCGTTTAATTATTACCGTAGATACAGGGATATCGGCTGTAAACGAAGCAAAGGCTGCAAAAGAGCTT
GGAATGGATTTGATTATTACAGATCACCATGAGCCTGGCCATGAGCTTCCTGAAGCATGGGCAATTGTGCATCCTAAGCA
TCCGGAAAGCACATACCCATTCCGGGAACTGGCCGGTGTTGGAGTAGCATTTAAACTTGCACATGCGCTATATGGTGAAA
TGCCTGATCACCTCTTGGAAATAGCTGCAATCGGCACAATTGCCGACCTTGTTTCTTTAACGGGAGAGAACAGGCTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAGAATACAGGTTTGAAAGCCTTGTTTAAAGCGGCTGGAATTGAACT
TCCATCCATTAATGAAGAAACAATCGGCTTTACAATCGGGCCTCGCCTCAATGCAGCCGGCAGGCTTGAAAGTGCGGATC
CGGCAGTGGATTTGCTTCTGACAAATGATCCTTATGAAGCACAAGCCATTGCTGAAGAAATTGAAATGTTAAATAAAGAG
AGGCAAGCTATTGTCAATGACATTGCAGCACAAGCGGTTAAAGAGGTTGAAACTAATTTTCCAATCAGTGAGAATTCAGT
AATTGTTGTAGGCAAAGAAGGCTGGAATGCCGGTGTAATTGGAATAGTAGCTTCGAAGCTTGTTGAAAAGTTTTACCGCC
CAGCTATTGTTCTCAGTTATGACAGTGATAAAGGGCTGGCAAAGGGATCAGCAAGAAGTATTAAAGGTTTTGATCTGTTC
AAAAATCTTTCTGAATGCCGGGATATCCTTCCCCACTTTGGGGGCCATCCAATGGCGGCAGGAATGACCTTGTCAATTGA
ATCGGTCGATGACCTCAGGGATAGACTGAATACTCTTGCAAATGAACAGCTGACCGAGGAAGATTTTATTCCAGTAACCA
GCATTGATGGCGTCTTCCATCTAAAGGATATCAGCCTCTCTTCTATTGAAGAAATGCAGCTGCTTGCCCCATTTGGGATG
GGAAATCCAAAACCTAAAGTCTTGATAAAAGAGGCCAATATTGCCGCTATGAGAAAAATCGGATCTGATCAAACTCATAT
AAAGGTCACCATCGAAAATGATGGATCTTCCCTTGATGGAATCGGCTTTGGCCTCGGACATTTGCATGAGCAGATTTCAC
CATATTCCAAGCTATCGGTTATTGGCGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATCTTCCTGCAG
GATATGGCAGTGAACTCCTGGCAGCTATTTGATATCCGGAGTTTAAAGCGGCTCGAAAGGCTCCAAAGCGTCATTCCTGA
CGTAAATACTACTTGGATATTCTTTAATGAGGAACATATATCCAAATTCAGGACATATGCAGGGGAAAGTATGGTGAAAA
TATCATCTGAAGAGGATGCAGAAGCATTAAAACTAGATGGCTCAAACATCGTGCTTGCTGATATGCCGCCTTCAAAGGAA
ATGCTTGCTCATGTATTCTCCGGAAAAAACCCTGCCAGAATTTATGCTCATTTTTATAAAGAGGACAGTGACTATTTCAG
CACTATTCCAACAAGAGATCATTTTAAGTGGTATTTTGCCCTGCTTGCTAAAAAAGGCTCGGTCGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAGGGATGGAGCAGGGAAACGGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGATTTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCAATTAAACGTGATTTAGCTGATTCGCGAACCTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(317-438)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.701

98.352

0.558