Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LIS79_RS11655 Genome accession   NZ_CP085389
Coordinates   2253499..2253792 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain CMF5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248499..2258792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS11605 (LIS79_11610) sinR 2248663..2248998 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  LIS79_RS11610 (LIS79_11615) tasA 2249066..2249866 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  LIS79_RS11615 (LIS79_11620) sipW 2249925..2250497 (-) 573 WP_041091749.1 signal peptidase I SipW -
  LIS79_RS11620 (LIS79_11625) tapA 2250547..2251074 (-) 528 WP_041091748.1 amyloid fiber anchoring/assembly protein TapA -
  LIS79_RS11625 (LIS79_11630) - 2251327..2251653 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  LIS79_RS11630 (LIS79_11635) - 2251688..2251882 (-) 195 WP_008342191.1 YqzE family protein -
  LIS79_RS11635 (LIS79_11640) comGG 2251943..2252326 (-) 384 WP_041091746.1 competence type IV pilus minor pilin ComGG -
  LIS79_RS11640 (LIS79_11645) comGF 2252323..2252820 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  LIS79_RS11645 (LIS79_11650) comGE 2252762..2253076 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  LIS79_RS11650 (LIS79_11655) comGD 2253060..2253506 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  LIS79_RS11655 (LIS79_11660) comGC 2253499..2253792 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  LIS79_RS11660 (LIS79_11665) comGB 2253809..2254849 (-) 1041 WP_017357986.1 competence type IV pilus assembly protein ComGB -
  LIS79_RS11665 (LIS79_11670) comGA 2254830..2255900 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  LIS79_RS11670 (LIS79_11675) - 2256366..2257235 (-) 870 WP_007501231.1 STAS domain-containing protein -
  LIS79_RS11680 (LIS79_11685) - 2257461..2257841 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LIS79_RS11685 (LIS79_11690) - 2258053..2258295 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=617352 LIS79_RS11655 WP_008342186.1 2253499..2253792(-) (comGC) [Bacillus altitudinis strain CMF5]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=617352 LIS79_RS11655 WP_008342186.1 2253499..2253792(-) (comGC) [Bacillus altitudinis strain CMF5]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTTATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392