Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LIS79_RS11940 Genome accession   NZ_CP085389
Coordinates   2304659..2305429 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2299659..2310429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS11920 (LIS79_11925) - 2299752..2300573 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  LIS79_RS11925 (LIS79_11930) - 2300599..2301237 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  LIS79_RS11930 (LIS79_11935) glyS 2301404..2303449 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  LIS79_RS11935 (LIS79_11940) glyQ 2303442..2304329 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  LIS79_RS11940 (LIS79_11945) recO 2304659..2305429 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  LIS79_RS11945 (LIS79_11950) - 2305465..2305608 (-) 144 WP_008342408.1 YqzL family protein -
  LIS79_RS11950 (LIS79_11955) era 2305756..2306661 (-) 906 WP_007501305.1 GTPase Era -
  LIS79_RS11955 (LIS79_11960) - 2306654..2307052 (-) 399 WP_008342410.1 cytidine deaminase -
  LIS79_RS11960 (LIS79_11965) - 2307165..2307551 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  LIS79_RS11965 (LIS79_11970) ybeY 2307529..2308008 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  LIS79_RS11970 (LIS79_11975) - 2308009..2310099 (-) 2091 WP_252225160.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=617354 LIS79_RS11940 WP_007501304.1 2304659..2305429(-) (recO) [Bacillus altitudinis strain CMF5]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=617354 LIS79_RS11940 WP_007501304.1 2304659..2305429(-) (recO) [Bacillus altitudinis strain CMF5]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758