Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LIN44_RS15820 Genome accession   NZ_CP085344
Coordinates   3440174..3440713 (-) Length   179 a.a.
NCBI ID   WP_227312891.1    Uniprot ID   -
Organism   Cupriavidus sp. MP-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3435174..3445713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN44_RS15795 (LIN44_15795) - 3435650..3436150 (-) 501 WP_227312886.1 ion channel -
  LIN44_RS15800 (LIN44_15800) - 3436370..3437389 (-) 1020 WP_227312887.1 collagen-like protein -
  LIN44_RS15805 (LIN44_15805) - 3437835..3438083 (+) 249 WP_227312888.1 hypothetical protein -
  LIN44_RS15810 (LIN44_15810) - 3438169..3438507 (-) 339 WP_227312889.1 RcnB family protein -
  LIN44_RS15815 (LIN44_15815) - 3438898..3440070 (+) 1173 WP_227312890.1 diguanylate cyclase -
  LIN44_RS15820 (LIN44_15820) ssb 3440174..3440713 (-) 540 WP_227312891.1 single-stranded DNA-binding protein Machinery gene
  LIN44_RS15825 (LIN44_15825) - 3440935..3442185 (-) 1251 WP_227312892.1 MFS transporter -
  LIN44_RS15830 (LIN44_15830) uvrA 3442409..3445270 (+) 2862 WP_227312893.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18707.47 Da        Isoelectric Point: 5.9517

>NTDB_id=617237 LIN44_RS15820 WP_227312891.1 3440174..3440713(-) (ssb) [Cupriavidus sp. MP-37]
MASVNKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVAMFGKLAEIAAQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGGDEGGYGGGGGGGYSREASGGGGYGGGRGAQGGGGQQGGAAR
RPQQPASNGFEDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=617237 LIN44_RS15820 WP_227312891.1 3440174..3440713(-) (ssb) [Cupriavidus sp. MP-37]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACGCGCTACATGCCCAGCGGCGACGC
GGTCACCAACCTGCGCCTGGCCACCACCGACCGCTACAAGGACAAGCAGTCCGGCGAGATGAAGGAAGCCACCGAATGGC
ATCGCGTGGCGATGTTCGGCAAGCTGGCCGAGATCGCCGCCCAATACCTGCGCAAGGGCTCGTCGGTCTATATCGAGGGC
CGCATCCGCACCCGCAAATGGCAGGACCAGTCCGGCCAGGACAAGTACTCTACCGAGATCGTTGCCGACCAGATGCAGAT
GCTGGGTTCACGCCAGGGCGGCGGCGGCGGTGGCGGCGATGAAGGCGGCTACGGTGGCGGTGGTGGCGGCGGCTATAGCC
GCGAAGCTTCGGGCGGCGGTGGCTATGGCGGCGGCCGTGGCGCACAGGGCGGTGGCGGCCAGCAGGGCGGCGCCGCGCGC
CGTCCGCAGCAGCCGGCCTCGAACGGCTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.151

100

0.542
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.486
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

45.763

98.883

0.453