Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGFG_RS11480 Genome accession   NC_022240
Coordinates   2110959..2111390 (-) Length   143 a.a.
NCBI ID   WP_003696281.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105959..2116390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS11455 (NGFG_01822) pilA 2106347..2107600 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  NGFG_RS15335 - 2107636..2107854 (-) 219 WP_157778910.1 hypothetical protein -
  NGFG_RS11460 (NGFG_02483) - 2107868..2108541 (-) 674 Protein_2146 opacity family porin -
  NGFG_RS11465 (NGFG_01821) pilE 2109185..2109685 (-) 501 WP_017147169.1 pilin Machinery gene
  NGFG_RS11470 - 2110056..2110199 (-) 144 WP_003691943.1 hypothetical protein -
  NGFG_RS11475 (NGFG_01819) - 2110458..2110841 (-) 384 Protein_2149 pilin -
  NGFG_RS11480 (NGFG_01818) pilE 2110959..2111390 (-) 432 WP_003696281.1 pilin Machinery gene
  NGFG_RS11485 (NGFG_01817) lpxC 2111496..2112419 (-) 924 WP_003696279.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NGFG_RS11490 (NGFG_02216) pilE 2112950..2113369 (-) 420 WP_017147167.1 pilin Machinery gene
  NGFG_RS11495 (NGFG_02216) - 2113465..2113884 (-) 420 Protein_2153 pilin -
  NGFG_RS11500 (NGFG_00001) - 2114341..2115285 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15279.02 Da        Isoelectric Point: 5.9416

>NTDB_id=61721 NGFG_RS11480 WP_003696281.1 2110959..2111390(-) (pilE) [Neisseria gonorrhoeae MS11]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYYLNNGEWPEDNGAAGVASASKIIGKYVKEVKVENGVVTAQMASSNVNKEIQ
GKKLSLWGRREDGSVKWFCGQPVKRDDTAAKAGTDDVAKDDAAGKKIDTKHLPSTCRDEPTAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=61721 NGFG_RS11480 WP_003696281.1 2110959..2111390(-) (pilE) [Neisseria gonorrhoeae MS11]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTTGC
CGGGTATTACCTGAATAACGGCGAATGGCCGGAAGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CACCGCCGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGGCAAAAAAATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

64.583

100

0.65
  pilE Neisseria gonorrhoeae MS11

65.957

98.601

0.65

Multiple sequence alignment