Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LI754_RS02240 Genome accession   NZ_CP085320
Coordinates   467377..467880 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain CJFA-182     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 467377..480016 467377..467880 within 0


Gene organization within MGE regions


Location: 467377..480016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS02240 ssbA 467377..467880 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LI754_RS02245 rpsR 467932..468174 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  LI754_RS02250 - 468403..469200 (-) 798 WP_000119675.1 type II toxin-antitoxin system PemK/MazF family toxin -
  LI754_RS02255 - 469224..470438 (-) 1215 WP_044292239.1 tyrosine-type recombinase/integrase -
  LI754_RS02260 - 470464..471255 (-) 792 WP_191239500.1 hypothetical protein -
  LI754_RS02265 - 471363..472082 (-) 720 WP_052502250.1 helix-turn-helix domain-containing protein -
  LI754_RS02270 - 472268..472480 (+) 213 WP_044292240.1 helix-turn-helix domain-containing protein -
  LI754_RS02275 - 472481..472753 (+) 273 WP_044292242.1 helix-turn-helix domain-containing protein -
  LI754_RS02280 - 472765..472911 (+) 147 WP_000784888.1 hypothetical protein -
  LI754_RS02285 tscA 472904..473113 (+) 210 WP_001058488.1 type II toxin-antitoxin system antitoxin TscA -
  LI754_RS02290 tscT 473116..473424 (+) 309 WP_044292249.1 type II toxin-antitoxin system toxin TscT -
  LI754_RS02295 - 473484..475100 (+) 1617 WP_044292251.1 hypothetical protein -
  LI754_RS02300 - 475276..476079 (+) 804 WP_044292253.1 bifunctional DNA primase/polymerase -
  LI754_RS02305 - 476066..476365 (+) 300 WP_078103647.1 pathogenicity island protein -
  LI754_RS02310 - 476340..476981 (+) 642 WP_044292258.1 pathogenicity island protein -
  LI754_RS02315 - 477498..477854 (+) 357 WP_044292260.1 hypothetical protein -
  LI754_RS02320 - 477873..478106 (+) 234 WP_234745439.1 hypothetical protein -
  LI754_RS02325 - 478157..478525 (+) 369 WP_234745438.1 hypothetical protein -
  LI754_RS02330 - 478579..479106 (+) 528 WP_044292262.1 spore coat protein -
  LI754_RS02335 - 479238..479450 (+) 213 WP_076692333.1 LuxR C-terminal-related transcriptional regulator -
  LI754_RS02340 - 479447..480016 (+) 570 WP_044292268.1 terminase small subunit -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=617179 LI754_RS02240 WP_000934799.1 467377..467880(+) (ssbA) [Staphylococcus aureus strain CJFA-182]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=617179 LI754_RS02240 WP_000934799.1 467377..467880(+) (ssbA) [Staphylococcus aureus strain CJFA-182]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365