Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NUU05_RS08610 Genome accession   NZ_CP102538
Coordinates   1648176..1648838 (-) Length   220 a.a.
NCBI ID   WP_011680771.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643176..1653838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS08605 (NUU05_08570) hpf 1647549..1648097 (-) 549 WP_011680772.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NUU05_RS08610 (NUU05_08575) comFC/cflB 1648176..1648838 (-) 663 WP_011680771.1 ComF family protein Machinery gene
  NUU05_RS08615 (NUU05_08580) comFA/cflA 1648819..1650138 (-) 1320 WP_011680770.1 DEAD/DEAH box helicase Machinery gene
  NUU05_RS08620 (NUU05_08585) - 1650193..1650819 (+) 627 WP_011680769.1 YigZ family protein -
  NUU05_RS08625 (NUU05_08590) cysK 1650921..1651847 (+) 927 WP_011680768.1 cysteine synthase A -
  NUU05_RS08630 (NUU05_08595) - 1652014..1652674 (-) 661 Protein_1634 CBS and ACT domain-containing protein -
  NUU05_RS08635 (NUU05_08600) - 1652810..1653520 (-) 711 WP_011680767.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26051.42 Da        Isoelectric Point: 8.9833

>NTDB_id=617153 NUU05_RS08610 WP_011680771.1 1648176..1648838(-) (comFC/cflB) [Streptococcus thermophilus strain TH-4]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLEDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=617153 NUU05_RS08610 WP_011680771.1 1648176..1648838(-) (comFC/cflB) [Streptococcus thermophilus strain TH-4]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGAGGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445