Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG286_RS00715 Genome accession   NZ_CP085265
Coordinates   162359..162976 (+) Length   205 a.a.
NCBI ID   WP_404344490.1    Uniprot ID   -
Organism   Vreelandella venusta strain ABH-461     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 157359..167976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG286_RS00705 (LG286_00705) uvrA 157861..160710 (-) 2850 WP_404345955.1 excinuclease ABC subunit UvrA -
  LG286_RS00710 (LG286_00710) - 160882..162261 (+) 1380 WP_404344489.1 MFS transporter -
  LG286_RS00715 (LG286_00715) ssb 162359..162976 (+) 618 WP_404344490.1 single-stranded DNA-binding protein Machinery gene
  LG286_RS00720 (LG286_00720) - 163066..163959 (+) 894 WP_404344491.1 sugar nucleotide-binding protein -
  LG286_RS00725 (LG286_00725) - 163956..164690 (+) 735 WP_404344492.1 lysophospholipid acyltransferase family protein -
  LG286_RS00730 (LG286_00730) fabB 164775..165992 (-) 1218 WP_404344493.1 beta-ketoacyl-ACP synthase I -
  LG286_RS00735 (LG286_00735) fabA 166005..166520 (-) 516 WP_188640106.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22370.41 Da        Isoelectric Point: 5.6744

>NTDB_id=616711 LG286_RS00715 WP_404344490.1 162359..162976(+) (ssb) [Vreelandella venusta strain ABH-461]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWMDRQSGQRQERTEWHRIVLFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRSGDFQGGGAPQGGYAQQPPAQQAPAQQNYGQGAPQQGGGGYPPQGGAP
QRGAQPAQQQPPAPQHQQPAPNHQNSSYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 618 bp        

>NTDB_id=616711 LG286_RS00715 WP_404344490.1 162359..162976(+) (ssb) [Vreelandella venusta strain ABH-461]
ATGGCGCGCGGTATTAACAAAGTTATTTTGATTGGCAACCTAGGCCAAGATCCAGAAGTACGCTTTACGCCCTCCGGTAC
CGCCGTGGCTAACCTGAATCTGGCCACCTCTGACACCTGGATGGATCGTCAAAGCGGCCAGCGCCAGGAGCGCACGGAAT
GGCACCGCATTGTGCTGTTCAATAAAACCGCAGAAATTGCTCAGCAGTATCTGAAGAAAGGCTCCAAAGTCTATATTGAA
GGCCGCCTGCAGACCCGTAAGTGGCAGGATCAGAATGGCCAAGATCGTTACAGCACTGAAATTGTCGCCAATGATATGCA
GATGCTGGACGGTCGCAGTGGCGACTTCCAGGGTGGCGGTGCACCTCAAGGTGGCTATGCCCAGCAGCCGCCTGCCCAGC
AAGCGCCTGCACAGCAAAACTACGGCCAAGGCGCGCCCCAGCAAGGTGGCGGCGGCTACCCGCCCCAAGGTGGCGCGCCT
CAGCGCGGCGCTCAGCCTGCCCAGCAACAGCCGCCGGCTCCTCAGCATCAGCAGCCTGCACCCAATCACCAAAATAGCAG
TTACGGTGCGCCGGATCCGGGCAATTTCGACGATTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.196

100

0.522
  ssb Glaesserella parasuis strain SC1401

50

99.512

0.498
  ssb Neisseria meningitidis MC58

48.02

98.537

0.473
  ssb Neisseria gonorrhoeae MS11

48.02

98.537

0.473