Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LG304_RS06730 | Genome accession | NZ_CP085259 |
| Coordinates | 1329780..1330682 (+) | Length | 300 a.a. |
| NCBI ID | WP_404398798.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain ABH-485 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1324780..1335682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG304_RS06690 (LG304_06675) | - | 1324864..1325418 (+) | 555 | WP_058611616.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LG304_RS06695 (LG304_06680) | - | 1325419..1326867 (+) | 1449 | WP_058611615.1 | rhomboid family intramembrane serine protease | - |
| LG304_RS06700 (LG304_06685) | - | 1326872..1327063 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| LG304_RS06705 (LG304_06690) | - | 1327060..1328031 (+) | 972 | WP_135016726.1 | ROK family glucokinase | - |
| LG304_RS06710 (LG304_06695) | - | 1328031..1328345 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| LG304_RS06715 (LG304_06700) | - | 1328375..1328614 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| LG304_RS06720 (LG304_06705) | - | 1328712..1329344 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| LG304_RS06725 (LG304_06710) | - | 1329378..1329626 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| LG304_RS06730 (LG304_06715) | comGA | 1329780..1330682 (+) | 903 | WP_404398798.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LG304_RS06735 (LG304_06720) | comGB | 1330672..1331712 (+) | 1041 | WP_077152202.1 | competence type IV pilus assembly protein ComGB | - |
| LG304_RS06740 (LG304_06725) | comGC | 1331727..1332044 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LG304_RS06745 (LG304_06730) | comGD | 1332025..1332471 (+) | 447 | WP_227531649.1 | competence type IV pilus minor pilin ComGD | - |
| LG304_RS06750 (LG304_06735) | comGE | 1332455..1332736 (+) | 282 | WP_404398801.1 | competence type IV pilus minor pilin ComGE | - |
| LG304_RS06755 (LG304_06740) | - | 1332711..1333145 (+) | 435 | WP_404398803.1 | competence type IV pilus minor pilin ComGF | - |
| LG304_RS06760 (LG304_06745) | - | 1333380..1333868 (+) | 489 | WP_096791892.1 | shikimate kinase | - |
| LG304_RS06765 (LG304_06750) | gcvT | 1334061..1335149 (+) | 1089 | WP_404398805.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34406.33 Da Isoelectric Point: 6.1198
>NTDB_id=616695 LG304_RS06730 WP_404398798.1 1329780..1330682(+) (comGA) [Mammaliicoccus sciuri strain ABH-485]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGLYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKSILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGLYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKSILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=616695 LG304_RS06730 WP_404398798.1 1329780..1330682(+) (comGA) [Mammaliicoccus sciuri strain ABH-485]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCTATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAATCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCTATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAATCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
51.786 |
93.333 |
0.483 |
| comGA | Staphylococcus aureus N315 |
51.786 |
93.333 |
0.483 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |