Detailed information NTG0616668

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LG308_RS17070
• Genome accession: NZ_CP085257
• Coordinates: 3681925..3683262 (+)
• Length: 445 a.a.
• NCBI ID: WP_404437913.1
• Uniprot ID: -
• Organism: Stutzerimonas chloritidismutans strain ABH-495
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3676925..3688262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG308_RS17050 (LG308_17015)	rluD	3677653..3678627 (-)	975	WP_222909447.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LG308_RS17055 (LG308_17020)	-	3678931..3679938 (+)	1008	WP_404437906.1	outer membrane protein assembly factor BamD	-
LG308_RS17060 (LG308_17025)	-	3679997..3680230 (+)	234	WP_404437909.1	PP0621 family protein	-
LG308_RS17065 (LG308_17030)	pilS	3680220..3681812 (+)	1593	WP_404437911.1	sensor histidine kinase	Regulator
LG308_RS17070 (LG308_17035)	pilR	3681925..3683262 (+)	1338	WP_404437913.1	sigma-54-dependent transcriptional regulator	Regulator
LG308_RS17075 (LG308_17040)	-	3683297..3684352 (-)	1056	WP_404437916.1	DUF2333 family protein	-
LG308_RS17080 (LG308_17045)	-	3684573..3686186 (+)	1614	WP_404437919.1	diguanylate cyclase	-
LG308_RS17085 (LG308_17050)	-	3686232..3688193 (+)	1962	WP_404437922.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49751.35 Da
• Isoelectric Point: 6.8306

>NTDB_id=616668 LG308_RS17070 WP_404437913.1 3681925..3683262(+) (pilR) [Stutzerimonas chloritidismutans strain ABH-495]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRTPNPNVTVDGRLLGASPPMNVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDVAQLAEVM
LRRLAQECGDTPARLHPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSDAPGMPENGEASLAQIDNLED
HLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=616668 LG308_RS17070 WP_404437913.1 3681925..3683262(+) (pilR) [Stutzerimonas chloritidismutans strain ABH-495]
ATGACCGCCCGCCAAAAAGCGCTGATCATCGATGACGAACCCGATATCCGGGAGCTGCTGGAGATCACGCTCGGGCGGAT
GAAGCTCGACACACGCAGCGCTCGCAACCTCAAGGAGGCGCGCGAGTGTCTGGCCCGGGAGCATTACGACCTGTGTCTAA
CCGACATGCGCCTGCCCGACGGGTGTGGATTGGAGCTGGTGCAGTTCATTCAGCAGCAATACCCGCAGCTCCCCGTTGCG
ATGATTACCGCTTACGGCAGCCTCGACACCGCCATAGGCGCACTCAAGGCAGGCGCGTTCGACTTTCTCACCAAACCGGT
CGACCTCGGACGACTGCGGGAGTTGGTCAATACCGCCCTGCGGCTCCGCACTCCAAATCCCAACGTAACGGTGGACGGCC
GCTTGCTTGGCGCGTCGCCGCCTATGAACGTGCTTCGCAAGCAGATCGGAAAACTGGCGCGCAGTCAGGCCCCGGTGTAT
ATCAGCGGCGAATCCGGCAGCGGCAAAGAACTTGTGGCGCGGCTGATCCATGAACAAGGCCCGCGCCATGAGCGCCCTTT
TGTGCCAGTCAACTGTGGTGCCATCCCATCTGAGCTGATGGAGAGTGAATTCTTCGGGCACAAGAAGGGCAGTTTCACCG
GGGCGATGGAGGACAAACCTGGCCTGTTCCAGGCCGCTAACGGCGGCACATTGTTTCTCGATGAAGTGGCGGACCTCCCC
CTTCCGATGCAGGTAAAGCTGCTCCGCGCGATCCAGGAAAAGGCCGTGCGCTCGGTTGGCGGCGCCAAAGAGGTCGTGGT
CGACGTGCGAATCCTCTGCGCCACGCACAAGGACTTAGCCAGCGAGGTTGCTGCCGGACGCTTCCGCCAGGATCTGTACT
ACCGCTTGAACGTCATTGAGTTACGCGTGCCGCCACTTCGCGAGCGCCGTGAAGACGTTGCGCAACTGGCCGAGGTGATG
CTTCGCCGCCTCGCCCAGGAATGCGGCGACACGCCCGCCCGACTGCACCCCGACGCATTGGCAAAACTGCAAAGCTATCG
GTTCCCGGGCAACGTGCGAGAACTGGAAAACATGCTGGAGCGCGCGTACACGCTTTGCGAAGGAGAGGAAATCAAGCCCA
GCGATCTGCGTTTGTCCGATGCCCCGGGTATGCCCGAGAATGGGGAAGCGAGCCTGGCTCAGATCGACAATCTCGAAGAT
CACTTAGAGGATGTCGAGCGCAAGCTAATCATGCAAGCGCTTGAGGAAACCCGCTGGAATCGCACGGCCGCCGCCCAGAG
ACTGGGCTTGTCATTCCGCTCCATGCGTTATCGCCTGAAGAAACTTGGGCTTGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	83.559	99.775	0.834
pilR	Acinetobacter baumannii strain A118	49.237	100	0.508
luxO	Vibrio cholerae strain A1552	39.013	100	0.391