Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LG308_RS17065 Genome accession   NZ_CP085257
Coordinates   3680220..3681812 (+) Length   530 a.a.
NCBI ID   WP_404437911.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain ABH-495     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3675220..3686812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG308_RS17045 (LG308_17010) pgeF 3676919..3677656 (-) 738 WP_404437904.1 peptidoglycan editing factor PgeF -
  LG308_RS17050 (LG308_17015) rluD 3677653..3678627 (-) 975 WP_222909447.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LG308_RS17055 (LG308_17020) - 3678931..3679938 (+) 1008 WP_404437906.1 outer membrane protein assembly factor BamD -
  LG308_RS17060 (LG308_17025) - 3679997..3680230 (+) 234 WP_404437909.1 PP0621 family protein -
  LG308_RS17065 (LG308_17030) pilS 3680220..3681812 (+) 1593 WP_404437911.1 sensor histidine kinase Regulator
  LG308_RS17070 (LG308_17035) pilR 3681925..3683262 (+) 1338 WP_404437913.1 sigma-54-dependent transcriptional regulator Regulator
  LG308_RS17075 (LG308_17040) - 3683297..3684352 (-) 1056 WP_404437916.1 DUF2333 family protein -
  LG308_RS17080 (LG308_17045) - 3684573..3686186 (+) 1614 WP_404437919.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59139.31 Da        Isoelectric Point: 8.1820

>NTDB_id=616667 LG308_RS17065 WP_404437911.1 3680220..3681812(+) (pilS) [Stutzerimonas chloritidismutans strain ABH-495]
MVTEHLTFLGQQGRRILRLYHLYRVAIGLVLVLLISSDLHSDLMRMINPGAFHFGAWLYLILNILIAVLLQNPKRELPVL
ALALLDVTQLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRVGFFIAAVAAAGLIYLTFYLSLNDSAASSQYVQAAALG
TLCFAAALLVQGLTRRLQVSETLARQRAEEVANLEALNAQILQRMRTGIIVLDSQERVLLANQGALELLGQQELTGERLA
PRCPDLIKGLQQWRDNPTLRPRNFKATAEGATLQPSFATLQHGVKQDTLVFLEDISHIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEMLDAADLRLTQIIQDHSRRMNLVIENILQLSRRRQAEPQLLDLKYWVHRFASEFRETLPAD
QQVHVETRGSSLQTRMDPNQLIQVLTNLVQNGLRYSGHKRKQSQVWLKLFRDESSDLPVLEVLDDGPGVPSEQVQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=616667 LG308_RS17065 WP_404437911.1 3680220..3681812(+) (pilS) [Stutzerimonas chloritidismutans strain ABH-495]
GTGGTAACTGAGCACCTGACGTTCCTAGGCCAGCAGGGCCGACGGATCCTTCGCCTCTATCATCTTTATCGCGTCGCGAT
TGGTCTCGTGCTGGTCCTGCTCATCAGCAGCGATCTACACAGCGACCTGATGCGCATGATCAACCCAGGCGCGTTTCACT
TCGGCGCCTGGCTCTACCTGATTCTCAACATCCTAATCGCCGTGCTGCTGCAGAACCCGAAACGGGAACTGCCTGTTCTG
GCGCTCGCCCTGTTAGACGTGACCCAACTCGCGGCGCTATTCTATTTTGCCGGCGGGACACCCAGCGGCATTGGCAACCT
GCTGATTGTCGCGGTCGCCATCGCGAATATCCTGCTGCACGGCCGCGTTGGTTTTTTTATTGCCGCAGTTGCCGCAGCCG
GGCTCATCTACCTGACCTTTTATTTAAGCCTCAACGATAGCGCTGCGAGCAGCCAGTATGTTCAGGCTGCCGCACTGGGC
ACGCTGTGTTTTGCAGCGGCGCTGCTGGTACAAGGGTTGACCCGACGCCTGCAGGTCAGCGAAACCCTCGCCCGGCAGCG
CGCCGAGGAAGTCGCCAATCTCGAAGCGCTGAACGCGCAAATCCTGCAACGCATGCGCACCGGGATCATCGTGCTCGATT
CTCAGGAGCGCGTACTGCTGGCCAACCAGGGCGCACTCGAATTGCTCGGGCAGCAGGAATTGACGGGCGAACGCCTCGCA
CCGCGCTGTCCCGATCTGATCAAAGGCTTACAGCAGTGGCGTGACAATCCGACGCTGCGGCCTCGCAACTTCAAGGCAAC
CGCCGAAGGCGCCACACTTCAGCCAAGCTTCGCGACCCTGCAACACGGCGTAAAGCAGGATACATTGGTCTTTCTCGAAG
ACATCTCACACATCGCGCAGAAGGCGCAGCAGCTCAAGCTCGCCTCACTTGGCCGCTTGACTGCGAGCATCGCTCACGAA
ATCCGCAATCCGCTCGGCGCGATCAGCCATGCCGCTCAGCTGCTGCAGGAGTCGGAGATGCTCGACGCAGCGGATCTACG
ACTCACGCAGATCATCCAGGATCATTCGCGACGAATGAACCTCGTGATCGAGAATATCCTTCAGCTGTCGCGCCGTCGCC
AAGCGGAGCCGCAGCTCCTAGATCTGAAATACTGGGTACATCGGTTCGCCAGCGAATTTCGCGAAACGTTGCCAGCCGAC
CAACAGGTGCATGTGGAGACCCGTGGCAGTTCACTGCAAACCCGCATGGACCCGAATCAGCTGATCCAGGTCCTGACTAA
CCTGGTGCAGAATGGACTGCGCTACAGCGGCCACAAGCGCAAGCAGTCGCAGGTATGGCTCAAGTTATTCCGTGACGAAA
GCAGTGACCTGCCGGTGCTTGAAGTGCTTGATGACGGACCGGGCGTGCCGAGCGAACAGGTTCAAAATATCTTCGAGCCA
TTTTTCACGACGGAAAACAAGGGCACCGGACTGGGGCTCTATATTTCCCGGGAGTTGTGTGAAAGCAATCAGGCTCGTCT
GGACTATCGTGAACGAGACGAGGGCGGTAGCTGCTTTCGTATCGTCTTCGCACATCCGCGCAAGCTGAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-249)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.151

100

0.642