Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG273_RS19145 Genome accession   NZ_CP085256
Coordinates   3720949..3721434 (-) Length   161 a.a.
NCBI ID   WP_379559983.1    Uniprot ID   -
Organism   Oceanobacillus kapialis strain ABH-508     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3715949..3726434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG273_RS19120 (LG273_19020) - 3716044..3718014 (-) 1971 WP_379559988.1 DHH family phosphoesterase -
  LG273_RS19125 (LG273_19025) - 3718053..3718997 (-) 945 WP_404456856.1 YybS family protein -
  LG273_RS19130 (LG273_19030) - 3719343..3719825 (+) 483 WP_404456860.1 DUF1189 family protein -
  LG273_RS19135 (LG273_19035) modA 3719864..3720646 (+) 783 WP_404456863.1 molybdate ABC transporter substrate-binding protein -
  LG273_RS19140 (LG273_19040) rpsR 3720696..3720926 (-) 231 WP_036578084.1 30S ribosomal protein S18 -
  LG273_RS19145 (LG273_19045) ssbA 3720949..3721434 (-) 486 WP_379559983.1 single-stranded DNA-binding protein Machinery gene
  LG273_RS19150 (LG273_19050) rpsF 3721450..3721740 (-) 291 WP_379559982.1 30S ribosomal protein S6 -
  LG273_RS19155 (LG273_19055) ychF 3721913..3723013 (-) 1101 WP_379559981.1 redox-regulated ATPase YchF -
  LG273_RS19160 (LG273_19060) - 3723256..3723453 (-) 198 WP_404456868.1 DUF951 domain-containing protein -
  LG273_RS19165 (LG273_19065) - 3723542..3724438 (-) 897 WP_404456871.1 mechanosensitive ion channel family protein -
  LG273_RS19170 (LG273_19070) - 3724478..3725488 (-) 1011 WP_404456874.1 hypothetical protein -
  LG273_RS19175 (LG273_19075) yyaC 3725575..3726207 (+) 633 WP_379559977.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18220.00 Da        Isoelectric Point: 4.9003

>NTDB_id=616641 LG273_RS19145 WP_379559983.1 3720949..3721434(-) (ssbA) [Oceanobacillus kapialis strain ABH-508]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNQQGNREADFINCVVWRRPAENLANFMKKGSMIGVDGRVQTR
TFDGQDGKTVFVTEIVADSVQFLETKGSSQNRGQDNPGFQQQNRNQNQYQPNQNQNQNQNQDDPFRNNGEPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=616641 LG273_RS19145 WP_379559983.1 3720949..3721434(-) (ssbA) [Oceanobacillus kapialis strain ABH-508]
ATGTTAAATCGTGTCGTACTAGTTGGCAGGTTAACGAAGGATCCTGATTTACGTTATACACCCAACGGAGTGGCTGTAGC
CAATTTTACGATTGCAGTTAATCGTCCATTTTCCAATCAGCAAGGCAATCGTGAAGCTGATTTCATTAACTGTGTCGTTT
GGAGAAGACCTGCGGAAAACCTTGCGAACTTTATGAAAAAAGGAAGCATGATTGGTGTTGATGGTCGTGTGCAAACACGT
ACTTTTGACGGCCAGGATGGTAAAACAGTATTTGTAACAGAAATTGTTGCAGATAGTGTTCAATTCTTGGAAACAAAAGG
TTCTTCCCAGAACAGAGGGCAAGACAATCCAGGTTTCCAACAACAAAACCGGAACCAAAATCAGTATCAGCCTAATCAGA
ACCAAAACCAGAATCAAAATCAGGACGACCCATTCCGAAATAATGGGGAGCCTATCGATATATCAGACGATGATTTACCA
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.428

100

0.671
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.839

0.373
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.366