Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG298_RS26095 Genome accession   NZ_CP085255
Coordinates   5199042..5199554 (-) Length   170 a.a.
NCBI ID   WP_048010214.1    Uniprot ID   A0AA46P374
Organism   Cytobacillus firmus strain ABH-509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5194042..5204554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS26075 (LG298_25900) rplI 5195158..5195604 (-) 447 WP_226618921.1 50S ribosomal protein L9 -
  LG298_RS26080 (LG298_25905) - 5195601..5197574 (-) 1974 WP_226618922.1 DHH family phosphoesterase -
  LG298_RS26085 (LG298_25910) - 5197606..5198541 (-) 936 WP_226618923.1 YybS family protein -
  LG298_RS26090 (LG298_25915) rpsR 5198744..5198983 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  LG298_RS26095 (LG298_25920) ssbA 5199042..5199554 (-) 513 WP_048010214.1 single-stranded DNA-binding protein Machinery gene
  LG298_RS26100 (LG298_25925) rpsF 5199590..5199877 (-) 288 WP_048010213.1 30S ribosomal protein S6 -
  LG298_RS26105 (LG298_25930) ychF 5200062..5201162 (-) 1101 WP_163140312.1 redox-regulated ATPase YchF -
  LG298_RS26110 (LG298_25935) - 5201326..5203320 (-) 1995 WP_404322966.1 molybdopterin-dependent oxidoreductase -
  LG298_RS26115 (LG298_25940) - 5203348..5203545 (-) 198 WP_035328295.1 DUF951 domain-containing protein -
  LG298_RS26120 (LG298_25945) - 5203548..5204438 (-) 891 WP_076262934.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18860.59 Da        Isoelectric Point: 4.7827

>NTDB_id=616604 LG298_RS26095 WP_048010214.1 5199042..5199554(-) (ssbA) [Cytobacillus firmus strain ABH-509]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGNYTRVDQDPFANDGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=616604 LG298_RS26095 WP_048010214.1 5199042..5199554(-) (ssbA) [Cytobacillus firmus strain ABH-509]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTGCTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAATCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGCGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCGGTAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCA
ATCAGAATCAACGACAGGATAATCGTAATCAGGGCAACTACACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAA
ATCGACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.787

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371