Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LG321_RS06700 Genome accession   NZ_CP085250
Coordinates   1302132..1303085 (+) Length   317 a.a.
NCBI ID   WP_223492776.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-541     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297132..1308085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG321_RS06675 (LG321_06650) clpB 1297159..1299753 (+) 2595 WP_223492770.1 ATP-dependent chaperone ClpB -
  LG321_RS06680 (LG321_06655) - 1299809..1299991 (-) 183 WP_010192034.1 YjzD family protein -
  LG321_RS06685 (LG321_06660) - 1300106..1300243 (+) 138 WP_223492772.1 hypothetical protein -
  LG321_RS06690 (LG321_06665) - 1300388..1301128 (+) 741 WP_223492774.1 hypothetical protein -
  LG321_RS06695 (LG321_06670) - 1301220..1301990 (+) 771 WP_223492775.1 hypothetical protein -
  LG321_RS06700 (LG321_06675) med 1302132..1303085 (+) 954 WP_223492776.1 BMP family ABC transporter substrate-binding protein Regulator
  LG321_RS06705 (LG321_06680) - 1303101..1303289 (+) 189 WP_223492777.1 ComZ family protein -
  LG321_RS06710 (LG321_06685) - 1303350..1303592 (-) 243 WP_223492778.1 hypothetical protein -
  LG321_RS06715 (LG321_06690) - 1303811..1304743 (+) 933 WP_223492779.1 beta-ketoacyl-ACP synthase III -
  LG321_RS06720 (LG321_06695) fabF 1304792..1306030 (+) 1239 WP_223493599.1 beta-ketoacyl-ACP synthase II -
  LG321_RS06725 (LG321_06700) - 1306153..1306935 (+) 783 WP_223492780.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35141.35 Da        Isoelectric Point: 4.1180

>NTDB_id=616397 LG321_RS06700 WP_223492776.1 1302132..1303085(+) (med) [Sutcliffiella horikoshii strain ABH-541]
MKKSLMVIILFILLLTACGQTTPESGDQKVGLLVPDTISDQVWGTKGYKGLLRIQTEYDLDVYYKEGIHTDTSIKEAVKE
FHKDGVTLVFGHGSEYAQTFNEISSDYPDIHFVCFNSQVQGDNVTSLNFEAHAMGFFGGMVAGHMTETNTIGILAAFEWQ
PEVDGFFEGALHENPDAKIIIKYTQDWNNPDKALEVLDDMIAQEVDVVYPAGDGYNVPVINSLKEQGLYAVGFVSDQSDL
GENTVLTSTIQHVPALYELVASRFFAGELESGNLSFDFKDDVISLGTFSPLVSKEYQENINQQIEDYKSTGLLPNEK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616397 LG321_RS06700 WP_223492776.1 1302132..1303085(+) (med) [Sutcliffiella horikoshii strain ABH-541]
ATGAAAAAATCATTAATGGTAATCATACTATTTATTCTTTTATTAACTGCATGTGGACAAACTACTCCTGAAAGCGGAGA
TCAAAAGGTCGGCTTGTTGGTCCCTGATACGATAAGTGATCAGGTATGGGGAACAAAAGGCTATAAAGGGCTGTTGCGGA
TTCAAACGGAATATGACCTGGATGTATATTATAAAGAAGGCATACATACTGATACATCGATTAAAGAAGCGGTGAAAGAG
TTTCATAAAGACGGAGTTACCTTGGTATTTGGGCACGGCAGCGAATATGCGCAAACATTTAATGAGATATCATCTGATTA
TCCAGACATTCATTTTGTATGTTTTAATTCACAAGTTCAAGGTGATAATGTAACAAGCTTAAATTTTGAAGCACATGCCA
TGGGCTTTTTCGGTGGGATGGTAGCTGGTCATATGACGGAGACTAATACTATCGGAATTTTAGCCGCATTTGAATGGCAG
CCTGAAGTGGACGGATTCTTCGAAGGGGCATTACATGAAAATCCTGATGCTAAAATTATAATAAAGTACACGCAAGACTG
GAATAATCCTGATAAAGCATTGGAAGTGCTTGATGATATGATCGCTCAAGAGGTGGATGTTGTGTATCCTGCTGGTGATG
GATATAATGTTCCTGTCATCAATAGCTTAAAGGAACAGGGTCTATATGCGGTAGGATTCGTCTCTGATCAGTCAGACTTA
GGGGAGAATACTGTACTTACCAGCACCATTCAGCATGTCCCTGCCTTGTACGAACTGGTGGCTAGTCGTTTCTTTGCAGG
GGAATTAGAATCTGGTAACCTTTCCTTTGATTTTAAAGATGATGTCATTTCACTTGGGACATTCAGTCCGCTAGTAAGCA
AGGAATACCAGGAAAACATTAATCAACAAATCGAGGATTATAAGTCCACCGGATTATTACCAAACGAAAAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.14

99.054

0.536