Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LG279_RS06645 Genome accession   NZ_CP085249
Coordinates   1288033..1288986 (+) Length   317 a.a.
NCBI ID   WP_404432090.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-543     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283033..1293986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG279_RS06620 (LG279_06595) clpB 1283056..1285650 (+) 2595 WP_404432084.1 ATP-dependent chaperone ClpB -
  LG279_RS06625 (LG279_06600) - 1285706..1285888 (-) 183 WP_063561617.1 YjzD family protein -
  LG279_RS06630 (LG279_06605) - 1286003..1286140 (+) 138 WP_157663733.1 hypothetical protein -
  LG279_RS06635 (LG279_06610) - 1286280..1287029 (+) 750 WP_404432086.1 hypothetical protein -
  LG279_RS06640 (LG279_06615) - 1287121..1287882 (+) 762 WP_404432088.1 hypothetical protein -
  LG279_RS06645 (LG279_06620) med 1288033..1288986 (+) 954 WP_404432090.1 BMP family ABC transporter substrate-binding protein Regulator
  LG279_RS06650 (LG279_06625) comZ 1289002..1289190 (+) 189 WP_404432092.1 ComZ family protein Regulator
  LG279_RS06655 (LG279_06630) - 1289251..1289493 (-) 243 WP_404432094.1 hypothetical protein -
  LG279_RS06660 (LG279_06635) - 1289712..1290644 (+) 933 WP_404432096.1 beta-ketoacyl-ACP synthase III -
  LG279_RS06665 (LG279_06640) fabF 1290693..1291931 (+) 1239 WP_404433388.1 beta-ketoacyl-ACP synthase II -
  LG279_RS06670 (LG279_06645) - 1292231..1293013 (+) 783 WP_404432098.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35174.43 Da        Isoelectric Point: 4.1316

>NTDB_id=616339 LG279_RS06645 WP_404432090.1 1288033..1288986(+) (med) [Sutcliffiella horikoshii strain ABH-543]
MKKSLMVFILFILLLTACGQTTPETGDQKVGLLVPDTISDQVWGTKGYKGLLRIQTEYDLDVFYKEGIHTDTSIKEAVKE
FHKDGVTLVFGHGSEYAQTFNEISSDYPDIHFVCFNSQVQGDNVTSLNFEAHAMGFFGGMVAGHMTETNTIGVLAAFEWQ
PEVDGFFEGALHENPDAKIIIKYTQDWNDPDKALEVLDDMIAQEVDVVYPAGDGYNVPVINSLKEQGLYAVGFVSDQSDL
GENTVLTSTIQHVPALYELVASRFFAGELESGNLSFDFKDDVISLGTFSPLVSKEYQEKINQQIEDYKSTGLLPNEK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616339 LG279_RS06645 WP_404432090.1 1288033..1288986(+) (med) [Sutcliffiella horikoshii strain ABH-543]
ATGAAAAAATCATTAATGGTATTCATACTATTTATTCTTTTATTAACTGCATGTGGACAAACTACTCCTGAAACCGGAGA
TCAAAAGGTCGGCTTGTTGGTCCCTGATACGATAAGTGATCAGGTATGGGGAACAAAAGGCTATAAAGGGCTGTTGCGGA
TCCAAACGGAATATGACCTGGATGTATTTTATAAAGAAGGCATACATACTGATACATCGATTAAAGAAGCGGTGAAAGAG
TTTCATAAAGACGGAGTAACCTTGGTATTTGGGCATGGCAGCGAATATGCGCAAACATTTAATGAGATATCATCTGATTA
TCCAGACATTCATTTTGTATGTTTTAATTCACAAGTTCAAGGTGATAATGTAACAAGCTTGAATTTTGAAGCACATGCCA
TGGGCTTTTTCGGTGGAATGGTAGCTGGTCATATGACGGAGACTAATACTATCGGTGTTTTAGCCGCATTTGAATGGCAG
CCTGAAGTGGACGGATTCTTCGAAGGTGCATTACATGAAAATCCTGATGCTAAAATTATAATAAAGTACACGCAAGACTG
GAATGATCCTGATAAGGCATTGGAAGTGCTTGATGATATGATCGCTCAAGAGGTGGATGTTGTGTATCCTGCTGGTGATG
GATATAATGTTCCCGTCATCAATAGCTTAAAGGAACAGGGTCTATATGCGGTAGGATTCGTCTCTGATCAGTCAGACTTA
GGGGAGAATACTGTACTTACCAGCACCATACAGCATGTCCCTGCCTTGTACGAACTGGTGGCTAGTCGGTTCTTTGCAGG
GGAATTAGAATCTGGTAACCTTTCCTTTGATTTTAAAGATGATGTGATTTCACTTGGGACATTCAGTCCGCTAGTAAGCA
AGGAATACCAGGAGAAAATTAATCAACAAATCGAGGATTATAAGTCTACAGGGTTATTACCAAATGAAAAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.14

99.054

0.536