Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SCI_RS09970 Genome accession   NC_022238
Coordinates   1990385..1991152 (+) Length   255 a.a.
NCBI ID   WP_003071657.1    Uniprot ID   U2YCD6
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985385..1996152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS09940 (SCI_1937) comE 1985945..1986694 (-) 750 WP_003071650.1 competence system response regulator transcription factor ComE Regulator
  SCI_RS09945 (SCI_1938) comD/comD1 1986694..1988007 (-) 1314 WP_020998131.1 GHKL domain-containing protein Regulator
  SCI_RS10430 (SCI_1939) - 1988027..1988173 (-) 147 WP_006268843.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  SCI_RS09960 (SCI_1941) rlmH 1988456..1988935 (-) 480 WP_006268880.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SCI_RS09965 (SCI_1942) htrA 1989140..1990330 (+) 1191 WP_006270334.1 S1C family serine protease Regulator
  SCI_RS09970 (SCI_1943) spo0J 1990385..1991152 (+) 768 WP_003071657.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29713.19 Da        Isoelectric Point: 9.5149

>NTDB_id=61633 SCI_RS09970 WP_003071657.1 1990385..1991152(+) (spo0J) [Streptococcus constellatus subsp. pharyngis C1050]
MEKYQYITLNDIQTNPYQPRKEFSEEKIAELANSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
VTDDEMMKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIAQTMGKSRPYITNSVRLLNLPLNIMEAIKEGRISQGHA
RLLINLSEKEQNQWFTKILSQELSVRQLEKQLHPHQKKTSAKNKYQLFLKEEENRLKKIFGTEISLQFSKQSQSGKICIH
FSSQEEYQRIIDSFK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=61633 SCI_RS09970 WP_003071657.1 1990385..1991152(+) (spo0J) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGAAAAATATCAATATATTACACTCAATGACATCCAAACAAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGAAAA
AATTGCTGAACTTGCTAATTCTATAAAAGAACATGGGATTATTCAGCCCATCATTGTACGAAAATCTCCAATAATTGGTT
ATGAATTATTAGCTGGTGAAAGGCGTTTTAGAGCTGCTAAATTAGCAGGCTTAACTAATATACCAGCTATTATAAAAGAA
GTAACAGATGATGAAATGATGAAGCAAGCCATTATTGAAAATTTACAACGAGAAGACTTAAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTAATTGACAAAGGGTTGACACACAAAGAAATCGCTCAAACAATGGGAAAATCACGTCCTTATATTA
CAAATTCTGTCCGTTTATTAAACTTACCTCTTAATATTATGGAAGCGATAAAAGAAGGAAGAATTTCTCAAGGACATGCT
CGTTTACTTATCAACTTATCAGAAAAAGAGCAAAATCAGTGGTTCACTAAAATCCTATCTCAAGAACTTTCAGTTCGACA
GCTAGAAAAACAATTGCATCCACATCAAAAAAAGACTTCAGCAAAAAACAAGTACCAACTTTTTCTCAAAGAAGAAGAAA
ACAGATTAAAAAAGATATTCGGTACAGAAATCTCACTCCAATTTTCTAAGCAATCGCAATCTGGAAAAATCTGTATTCAC
TTTTCAAGTCAAGAAGAATATCAAAGAATTATTGATAGCTTTAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-190)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2YCD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.725

100

0.537

Multiple sequence alignment