Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SCI_RS09965 Genome accession   NC_022238
Coordinates   1989140..1990330 (+) Length   396 a.a.
NCBI ID   WP_006270334.1    Uniprot ID   U2XXY1
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1984140..1995330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS09940 (SCI_1937) comE 1985945..1986694 (-) 750 WP_003071650.1 competence system response regulator transcription factor ComE Regulator
  SCI_RS09945 (SCI_1938) comD/comD1 1986694..1988007 (-) 1314 WP_020998131.1 GHKL domain-containing protein Regulator
  SCI_RS10430 (SCI_1939) - 1988027..1988173 (-) 147 WP_006268843.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  SCI_RS09960 (SCI_1941) rlmH 1988456..1988935 (-) 480 WP_006268880.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SCI_RS09965 (SCI_1942) htrA 1989140..1990330 (+) 1191 WP_006270334.1 S1C family serine protease Regulator
  SCI_RS09970 (SCI_1943) spo0J 1990385..1991152 (+) 768 WP_003071657.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 41637.72 Da        Isoelectric Point: 9.8633

>NTDB_id=61632 SCI_RS09965 WP_006270334.1 1989140..1990330(+) (htrA) [Streptococcus constellatus subsp. pharyngis C1050]
MKNSSNFTKKLLWLFMVLAIGFIGGLFGNLTSSKLSTNSSTTTKVNKVTTAYKNTNSTTQAVSKVKDAVVSVITYANNNS
QNSVFGNDDSNTNNDNSQQVASEGSGVIYKKDGKYAYLVTNTHVINGAKKVDIRLADGNKVPGEIIGSDTYSDISVVRIS
ADKVKTVAEFGDSSKLTVGETAIAIGSPLGSNYANTVTQGIISSLNRNVSLKSESGQTISTQAIQTDTAINPGNSGGPLV
NIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDVINIINQLEANGTVTRPALGIQMIDITNLSNSDLSRLKLPSKVTSGV
VVRSAQAGMPAAGKLQKYDVITKVDGKDISSVSDLQSALYKHSIGDDIKITFYRNGKETTTTIKLTKSTKDLDSNN

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=61632 SCI_RS09965 WP_006270334.1 1989140..1990330(+) (htrA) [Streptococcus constellatus subsp. pharyngis C1050]
ATGAAAAATTCTTCAAATTTTACAAAAAAATTATTATGGCTTTTCATGGTCTTAGCTATAGGTTTTATTGGTGGTTTATT
TGGAAACTTAACCTCATCAAAATTATCAACAAATAGTTCTACAACAACTAAGGTTAACAAAGTTACTACTGCTTATAAAA
ATACAAATTCTACAACACAAGCTGTAAGCAAAGTAAAGGATGCAGTTGTATCTGTTATTACCTATGCTAATAATAATTCT
CAAAATAGTGTTTTTGGAAATGATGATTCAAATACTAATAACGATAATTCTCAACAAGTAGCTAGTGAAGGATCTGGGGT
TATTTATAAAAAAGACGGAAAATACGCCTACTTAGTGACCAATACCCATGTTATTAATGGTGCTAAAAAAGTTGATATTC
GTTTGGCTGATGGGAATAAAGTTCCTGGAGAAATTATAGGTTCAGATACTTATTCTGATATCTCTGTTGTTCGTATTAGT
GCTGATAAAGTAAAAACAGTTGCTGAATTTGGAGATTCTAGTAAATTAACTGTTGGTGAAACAGCTATTGCGATTGGAAG
TCCACTCGGATCAAATTATGCTAATACTGTGACACAAGGAATTATTTCTAGCTTAAATCGTAATGTGTCTTTAAAATCTG
AAAGCGGTCAAACTATTTCAACACAAGCTATCCAAACTGATACAGCTATCAATCCAGGGAATTCTGGTGGTCCACTTGTA
AATATCCAAGGACAAGTAATTGGTATTACTTCAAGTAAAATTGCTAGCAACGGTGGAACTTCTGTTGAGGGATTAGGTTT
TGCCATTCCATCTAATGATGTTATTAATATTATCAATCAATTAGAAGCAAACGGAACTGTTACACGACCAGCTCTAGGAA
TCCAAATGATCGACATCACTAATCTGTCTAATTCAGATTTATCACGCTTAAAACTCCCATCCAAAGTAACTAGTGGGGTT
GTTGTACGTTCAGCTCAAGCTGGGATGCCTGCAGCAGGAAAGCTTCAAAAATATGATGTTATTACAAAAGTAGATGGCAA
AGACATTTCCTCAGTAAGTGATTTACAATCTGCTTTATACAAACATTCAATTGGTGATGATATAAAAATTACATTTTATC
GTAATGGAAAAGAAACAACAACTACTATTAAGCTGACAAAATCTACAAAAGATTTAGATTCAAATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB U2XXY1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

74.25

100

0.75

  htrA Streptococcus mitis NCTC 12261

72.292

100

0.725

  htrA Streptococcus pneumoniae R6

72.04

100

0.722

  htrA Streptococcus pneumoniae TIGR4

72.04

100

0.722

  htrA Streptococcus pneumoniae D39

72.04

100

0.722

  htrA Streptococcus pneumoniae Rx1

72.04

100

0.722

  htrA Streptococcus mutans UA159

55.838

99.495

0.556


Multiple sequence alignment