Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG281_RS02755 Genome accession   NZ_CP085243
Coordinates   559424..559900 (-) Length   158 a.a.
NCBI ID   WP_404404134.1    Uniprot ID   -
Organism   Pelagibacterium halotolerans strain ABH-592     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 554424..564900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG281_RS02735 (LG281_02740) rocF 554930..555856 (-) 927 WP_404406595.1 arginase -
  LG281_RS02740 (LG281_02745) - 555974..556417 (+) 444 WP_404404128.1 Lrp/AsnC family transcriptional regulator -
  LG281_RS02745 (LG281_02750) - 556515..558779 (+) 2265 WP_404404130.1 RND family transporter -
  LG281_RS02750 (LG281_02755) - 558757..559287 (+) 531 WP_404404132.1 hypothetical protein -
  LG281_RS02755 (LG281_02760) ssb 559424..559900 (-) 477 WP_404404134.1 single-stranded DNA-binding protein Machinery gene
  LG281_RS02760 (LG281_02765) - 560181..560426 (+) 246 WP_404404136.1 hypothetical protein -
  LG281_RS02765 (LG281_02770) uvrA 560561..563455 (+) 2895 WP_404404138.1 excinuclease ABC subunit UvrA -
  LG281_RS02770 (LG281_02775) - 563645..563815 (+) 171 WP_404404140.1 hypothetical protein -
  LG281_RS02775 (LG281_02780) - 563930..564079 (+) 150 WP_404404142.1 DUF1127 domain-containing protein -
  LG281_RS02780 (LG281_02785) - 564143..564343 (-) 201 WP_404404144.1 DUF4169 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17455.32 Da        Isoelectric Point: 5.9534

>NTDB_id=616318 LG281_RS02755 WP_404404134.1 559424..559900(-) (ssb) [Pelagibacterium halotolerans strain ABH-592]
MSGSVNKVILVGNLGADPEVRNLPNGGQVANLRIATSERWRDRNTGEQRERTEWHRVVIFSEGLVKVVQNYLRKGSKVYI
EGQIQTRKWERDGQDQYTTEIVLQGFNSTLVMLDGRGGEGGDFGGGGGGYSSPRQAENRRPSSQPAFEPGGMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=616318 LG281_RS02755 WP_404404134.1 559424..559900(-) (ssb) [Pelagibacterium halotolerans strain ABH-592]
ATGTCGGGAAGCGTCAACAAGGTGATATTGGTGGGCAATCTGGGCGCCGACCCGGAAGTGCGCAACCTGCCCAATGGCGG
CCAGGTCGCCAATCTGCGCATCGCGACCTCCGAACGCTGGCGCGACCGCAACACCGGCGAGCAGCGCGAGCGCACCGAAT
GGCACCGGGTGGTGATTTTCTCCGAAGGGCTGGTCAAGGTGGTGCAGAACTATCTGCGCAAAGGCTCGAAGGTCTATATC
GAGGGCCAGATCCAGACCCGCAAATGGGAACGGGACGGTCAGGACCAGTATACGACCGAGATCGTGTTGCAGGGGTTCAA
TTCCACCCTCGTCATGCTCGACGGCCGAGGCGGTGAGGGCGGGGATTTCGGGGGCGGCGGGGGCGGATATTCCAGCCCGC
GACAGGCCGAAAACCGGCGTCCGTCCAGCCAGCCCGCCTTCGAGCCGGGCGGCATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.206

100

0.589
  ssb Vibrio cholerae strain A1552

53.179

100

0.582
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.462
  ssb Neisseria meningitidis MC58

40

100

0.456