Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG301_RS00695 Genome accession   NZ_CP085241
Coordinates   151245..151913 (+) Length   222 a.a.
NCBI ID   WP_404472567.1    Uniprot ID   -
Organism   Vreelandella venusta strain ABH-602     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 146245..156913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG301_RS00685 (LG301_00685) uvrA 146743..149592 (-) 2850 WP_404472564.1 excinuclease ABC subunit UvrA -
  LG301_RS00690 (LG301_00690) - 149763..151142 (+) 1380 WP_404472566.1 MFS transporter -
  LG301_RS00695 (LG301_00695) ssb 151245..151913 (+) 669 WP_404472567.1 single-stranded DNA-binding protein Machinery gene
  LG301_RS00700 (LG301_00700) - 151960..152850 (+) 891 WP_404472569.1 sugar nucleotide-binding protein -
  LG301_RS00705 (LG301_00705) - 152847..153581 (+) 735 WP_404472571.1 lysophospholipid acyltransferase family protein -
  LG301_RS00710 (LG301_00710) fabB 153664..154881 (-) 1218 WP_404472573.1 beta-ketoacyl-ACP synthase I -
  LG301_RS00715 (LG301_00715) fabA 154894..155409 (-) 516 WP_009097700.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24091.10 Da        Isoelectric Point: 5.2221

>NTDB_id=616279 LG301_RS00695 WP_404472567.1 151245..151913(+) (ssb) [Vreelandella venusta strain ABH-602]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWMDRQSGQRQERTEWHRIVLFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRSGDFQGGGAPQGNYAQGNTAQNNYAQGNTAPAGQPQNAPGQNGYGQNN
PGQVPPAQNAPQQPGGYPQQGGAQRGPQPAPQQHQPAPGNQNSNYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 669 bp        

>NTDB_id=616279 LG301_RS00695 WP_404472567.1 151245..151913(+) (ssb) [Vreelandella venusta strain ABH-602]
ATGGCGCGCGGCATTAACAAAGTCATTTTAATTGGCAATCTCGGGCAAGACCCGGAAGTACGGTTTACGCCTTCAGGTAC
CGCCGTTGCTAACTTGAACCTTGCGACCTCCGATACGTGGATGGATCGTCAGAGCGGCCAGCGACAAGAGCGCACCGAGT
GGCACCGTATTGTACTGTTCAATAAAACCGCCGAGATTGCCCAGCAGTATTTGAAAAAAGGCTCCAAGGTTTACATTGAG
GGACGCCTGCAAACCCGCAAGTGGCAAGACCAGAATGGTCAAGATCGCTACAGTACTGAAATTGTTGCCAATGACATGCA
GATGCTGGATGGCCGCAGCGGTGATTTCCAGGGCGGCGGCGCACCGCAGGGGAATTACGCTCAAGGTAATACTGCCCAGA
ATAACTATGCTCAGGGCAATACCGCACCGGCGGGTCAGCCGCAAAATGCTCCTGGTCAAAACGGCTACGGGCAAAACAAC
CCAGGGCAGGTTCCGCCGGCTCAAAATGCACCCCAGCAGCCGGGTGGCTACCCACAGCAAGGCGGCGCCCAGCGTGGGCC
ACAGCCTGCTCCGCAGCAACATCAGCCTGCGCCCGGCAATCAAAACAGCAACTACGGCGCGCCGGACCCGGGTAACTTCG
ACGATTTTGATGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.899

100

0.5
  ssb Glaesserella parasuis strain SC1401

45.701

99.55

0.455
  ssb Neisseria gonorrhoeae MS11

43.243

100

0.432
  ssb Neisseria meningitidis MC58

43.182

99.099

0.428