Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG306_RS07635 Genome accession   NZ_CP085234
Coordinates   1559957..1560454 (+) Length   165 a.a.
NCBI ID   WP_017504124.1    Uniprot ID   A0A2X1BAH6
Organism   Brevundimonas vesicularis strain ADH2-360     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1554957..1565454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG306_RS07620 (LG306_07605) - 1555911..1558610 (+) 2700 WP_404419468.1 transcriptional regulator -
  LG306_RS07625 (LG306_07610) - 1558692..1559363 (+) 672 WP_404419470.1 hypothetical protein -
  LG306_RS07630 (LG306_07615) - 1559363..1559788 (+) 426 WP_404419472.1 hypothetical protein -
  LG306_RS07635 (LG306_07620) ssb 1559957..1560454 (+) 498 WP_017504124.1 single-stranded DNA-binding protein Machinery gene
  LG306_RS07640 (LG306_07625) - 1560465..1560920 (+) 456 WP_404419474.1 thiol-disulfide oxidoreductase DCC family protein -
  LG306_RS07645 (LG306_07630) - 1560917..1562218 (+) 1302 WP_404419476.1 SDR family oxidoreductase -
  LG306_RS07650 (LG306_07635) - 1562215..1562685 (+) 471 WP_404419478.1 DUF2269 family protein -
  LG306_RS07655 (LG306_07640) - 1562749..1563687 (+) 939 WP_404419480.1 DMT family transporter -
  LG306_RS07660 (LG306_07645) - 1563717..1564250 (+) 534 WP_404419482.1 DUF1003 domain-containing protein -
  LG306_RS07665 (LG306_07650) - 1564290..1564865 (-) 576 WP_404419484.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17815.66 Da        Isoelectric Point: 5.9696

>NTDB_id=616185 LG306_RS07635 WP_017504124.1 1559957..1560454(+) (ssb) [Brevundimonas vesicularis strain ADH2-360]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGGGGGRGDDDYSSGFSTGGANKPSGPKESYDLN
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=616185 LG306_RS07635 WP_017504124.1 1559957..1560454(+) (ssb) [Brevundimonas vesicularis strain ADH2-360]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGGCGCGACCCCGAAATCCGCTCCATGCCCAACGGCGA
CCGCATCGCCAACCTGTCCATCGCCACCTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGTCGAGAACTATGTGAAGAAGGGCTCGACCGTCTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAGAAATATTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGTGAACTGACCATGCTGGGCGGCCGTTCGGAAGGCGGCTCGTCAGGCGGTGGTTACGGCGGCGGCGGTGGTCGCG
GCGATGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACAAGCCGAGCGGCCCCAAGGAAAGCTACGACCTGAAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1BAH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.533
  ssb Vibrio cholerae strain A1552

48

100

0.509
  ssb Neisseria meningitidis MC58

40

100

0.436
  ssb Neisseria gonorrhoeae MS11

40

100

0.436