Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SCI_RS08180 Genome accession   NC_022238
Coordinates   1643605..1644531 (-) Length   308 a.a.
NCBI ID   WP_006268005.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638605..1649531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08160 (SCI_1600) - 1639595..1640560 (+) 966 WP_006268416.1 LacI family DNA-binding transcriptional regulator -
  SCI_RS08165 (SCI_1601) - 1640630..1641452 (-) 823 Protein_1614 Cof-type HAD-IIB family hydrolase -
  SCI_RS08170 (SCI_1602) amiF 1641595..1642518 (-) 924 WP_020998024.1 ATP-binding cassette domain-containing protein Regulator
  SCI_RS08175 (SCI_1603) amiE 1642529..1643596 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCI_RS08180 (SCI_1604) amiD 1643605..1644531 (-) 927 WP_006268005.1 oligopeptide ABC transporter permease OppC Regulator
  SCI_RS08185 (SCI_1605) amiC 1644531..1646027 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCI_RS08190 (SCI_1606) amiA3 1646391..1648370 (-) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34475.51 Da        Isoelectric Point: 9.8589

>NTDB_id=61612 SCI_RS08180 WP_006268005.1 1643605..1644531(-) (amiD) [Streptococcus constellatus subsp. pharyngis C1050]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTVKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=61612 SCI_RS08180 WP_006268005.1 1643605..1644531(-) (amiD) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGACCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTTATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
TATTCGTATCCAAATTCTACGTTATCGTGATTTAGAGTATAACCTTGCCAGTCGCACTTTGGGAACACCGACTGTTAAAA
TCATTGTAAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTGACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCCTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCGGATTATTC
ACAAAATGTTACAACAAATGCATATCTTTTCTGGATTCCATTAACAACGTTGATTTTGGTTTCCCTTTCCCTATTCGTTG
TCGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment