Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SCI_RS08170 Genome accession   NC_022238
Coordinates   1641595..1642518 (-) Length   307 a.a.
NCBI ID   WP_020998024.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636595..1647518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08155 (SCI_1599) - 1638160..1639614 (+) 1455 WP_020998023.1 sucrose-6-phosphate hydrolase -
  SCI_RS08160 (SCI_1600) - 1639595..1640560 (+) 966 WP_006268416.1 LacI family DNA-binding transcriptional regulator -
  SCI_RS08165 (SCI_1601) - 1640630..1641452 (-) 823 Protein_1614 Cof-type HAD-IIB family hydrolase -
  SCI_RS08170 (SCI_1602) amiF 1641595..1642518 (-) 924 WP_020998024.1 ATP-binding cassette domain-containing protein Regulator
  SCI_RS08175 (SCI_1603) amiE 1642529..1643596 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCI_RS08180 (SCI_1604) amiD 1643605..1644531 (-) 927 WP_006268005.1 oligopeptide ABC transporter permease OppC Regulator
  SCI_RS08185 (SCI_1605) amiC 1644531..1646027 (-) 1497 WP_006268182.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34839.99 Da        Isoelectric Point: 6.3204

>NTDB_id=61610 SCI_RS08170 WP_020998024.1 1641595..1642518(-) (amiF) [Streptococcus constellatus subsp. pharyngis C1050]
MLEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIFFDGKRINGKKSKE
EESEVIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=61610 SCI_RS08170 WP_020998024.1 1641595..1642518(-) (amiF) [Streptococcus constellatus subsp. pharyngis C1050]
ATGCTTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGTAAGAAATTTGTTGCTGTAAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCCGGCTCTGGTAAGACAACAATCGGTCGTG
CCATTATTGGTTTGAACGATACTAGCAAGGGAGATATCTTCTTTGATGGAAAGAGAATCAATGGTAAGAAATCAAAAGAG
GAAGAATCAGAAGTGATTCGCAAGATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTATATTATTTCAGAGGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAGGTGAAAGATATTA
TTCATGAGGTAGGGTTGTTATCAGAGCATTTGACCCGCTACCCGCATGAATTTTCTGGTGGTCAGCGTCAACGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAGCCAGATTTTGTGATTGCAGATGAGCCGATTTCAGCACTTGACGTTTCTGTGCGCGC
ACAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGTTTGACTTATCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTTATTTATAAGGGTGTGATTGTCGAAGTAGCTGAAACAGAAGAACTCTTTAAC
AATCCAATTCATCCTTATACTCAGTCTTTATTGTCAGCTGTGCCAATTCCAGATCCAATCTTGGAACGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.928

99.674

0.866
  amiF Streptococcus salivarius strain HSISS4

86.928

99.674

0.866
  amiF Streptococcus thermophilus LMD-9

86.601

99.674

0.863

Multiple sequence alignment