Detailed information NTG0616115

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LG309_RS02960
• Genome accession: NZ_CP085231
• Coordinates: 653864..655201 (-)
• Length: 445 a.a.
• NCBI ID: WP_125875634.1
• Uniprot ID: A0A3R8V7V7
• Organism: Stutzerimonas chloritidismutans strain ADH2-893
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 648864..660201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG309_RS02950 (LG309_02955)	-	650917..652512 (-)	1596	WP_014819059.1	PleD family two-component system response regulator	-
LG309_RS02955 (LG309_02960)	-	652728..653786 (+)	1059	WP_125859895.1	DUF2333 family protein	-
LG309_RS02960 (LG309_02965)	pilR	653864..655201 (-)	1338	WP_125875634.1	sigma-54 dependent transcriptional regulator	Regulator
LG309_RS02965 (LG309_02970)	pilS	655326..656918 (-)	1593	WP_041015969.1	PAS domain-containing sensor histidine kinase	Regulator
LG309_RS02970 (LG309_02975)	-	656908..657141 (-)	234	WP_014819063.1	PP0621 family protein	-
LG309_RS02975 (LG309_02980)	-	657258..658247 (-)	990	WP_404396751.1	outer membrane protein assembly factor BamD	-
LG309_RS02980 (LG309_02985)	rluD	658453..659427 (+)	975	WP_014819065.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LG309_RS02985 (LG309_02990)	pgeF	659424..660158 (+)	735	WP_125859889.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49481.93 Da
• Isoelectric Point: 6.3298

>NTDB_id=616115 LG309_RS02960 WP_125875634.1 653864..655201(-) (pilR) [Stutzerimonas chloritidismutans strain ADH2-893]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLELVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVGTALRLRAPTAEMPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLAEAM
LRRLAAECGDSSAHLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGVSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=616115 LG309_RS02960 WP_125875634.1 653864..655201(-) (pilR) [Stutzerimonas chloritidismutans strain ADH2-893]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCGGATATCCGCGAACTGCTGGAAATCACTCTTGGCCGCAT
GAAACTCGATACCCGCAGCGCTCGCAATCTCAAGGAAGCGCGCGAATGCCTGGCCCGCGAGCATTACGACCTGTGCCTTA
CCGATATGCGCCTGCCCGATGGCAGCGGCCTGGAGCTGGTGCAATACATTCAGCAACAGCACCCGCAGCTGCCGGTGGCG
ATGATCACTGCATACGGCAGCCTGGATACCGCCATTGGCGCGCTCAAGGCCGGGGCATTCGACTTTCTCACCAAACCGGT
GGACCTCAACCGCTTGCGCGAGCTGGTCGGCACGGCCCTGCGCCTGAGGGCGCCTACAGCGGAAATGCCGGTGGACAGCC
GCCTGCTCGGCAGCTCGCCACCCATGAAGACCCTTCGCAAGCAGATCGGCAAACTCGCCCGCAGCCAGGCGCCGGTTTAT
ATCAGCGGCGAGTCCGGCAGCGGAAAGGAGCTGGTGGCCCGACTGATTCACGAGCAGGGTCCTCGTAGTGAAAAGCCCTT
TGTGCCCGTCAACTGCGGCGCGATCCCGTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCAGTG
GCGCCATCGAGGACAAACCCGGGCTATTCCAGGCCGCCAATGGCGGCACGCTGTTCCTCGACGAGGTAGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAAGCTGTACGCGCGGTCGGCGGCGCTCAGGAAGTAATGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCAGCGAAGTGGCCGCAGGCCGTTTCCGCCAGGATCTGTATT
ACCGCTTGAATGTCATCGAACTGCGCGTGCCGCCACTGCGCGAGCGTCGCGAAGACATTGGCCTGCTCGCCGAAGCCATG
CTTCGGCGTCTTGCGGCGGAGTGCGGTGACAGCAGCGCTCACCTGCACCCGGATGCTCTGGCCAAGCTGGAAAACTATCG
CTTCCCGGGGAACGTTCGTGAGCTGGAGAACATGCTCGAGCGGGCCTACACACTCTGCGAGGGCGATGAGATCAAGGCGG
GCGATCTACGCTTGGCAGACAGCCCAGGCGTATCGGAGAACGGTGAAGCCAGTCTGGCGCAGATCGACAATCTGGAAGAT
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCGGCAGCCCAACG
GCTGGGGCTGACCTTCCGTTCGATGCGTTACCGGTTGAAAAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A3R8V7V7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	85.811	99.775	0.856
pilR	Acinetobacter baumannii strain A118	50.109	100	0.517
luxO	Vibrio cholerae strain A1552	37.584	100	0.378