Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LG309_RS02965 Genome accession   NZ_CP085231
Coordinates   655326..656918 (-) Length   530 a.a.
NCBI ID   WP_041015969.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain ADH2-893     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 650326..661918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG309_RS02950 (LG309_02955) - 650917..652512 (-) 1596 WP_014819059.1 PleD family two-component system response regulator -
  LG309_RS02955 (LG309_02960) - 652728..653786 (+) 1059 WP_125859895.1 DUF2333 family protein -
  LG309_RS02960 (LG309_02965) pilR 653864..655201 (-) 1338 WP_125875634.1 sigma-54 dependent transcriptional regulator Regulator
  LG309_RS02965 (LG309_02970) pilS 655326..656918 (-) 1593 WP_041015969.1 PAS domain-containing sensor histidine kinase Regulator
  LG309_RS02970 (LG309_02975) - 656908..657141 (-) 234 WP_014819063.1 PP0621 family protein -
  LG309_RS02975 (LG309_02980) - 657258..658247 (-) 990 WP_404396751.1 outer membrane protein assembly factor BamD -
  LG309_RS02980 (LG309_02985) rluD 658453..659427 (+) 975 WP_014819065.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LG309_RS02985 (LG309_02990) pgeF 659424..660158 (+) 735 WP_125859889.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58861.94 Da        Isoelectric Point: 7.8132

>NTDB_id=616116 LG309_RS02965 WP_041015969.1 655326..656918(-) (pilS) [Stutzerimonas chloritidismutans strain ADH2-893]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLEMSNPQLFQYGAWIYLILNIIVAVLVQNPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSIQRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLAGERLA
PRCPELLKALQQWRGNPTLRPPNLRATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLGPQ
QTLHLDTVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQNPRAQVWLRLFRDEASDLPIVEVLDDGPGIAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=616116 LG309_RS02965 WP_041015969.1 655326..656918(-) (pilS) [Stutzerimonas chloritidismutans strain ADH2-893]
GTGGGCACTGAAAACCTCACCTTCTTTGGCGATCAGGGACGGCGGATTCTCCGCCTGTACCACCTCTATCGGCTGACTAT
CGGCCTGGCGCTGGTTCTGCTGATCAGCGCCGACCTGCACAACGACCTGCTGGAGATGAGCAACCCGCAGCTCTTTCAGT
ACGGCGCCTGGATCTACCTGATCCTCAACATCATCGTTGCCGTGCTGGTGCAGAACCCGGAGCGCGATCTGCCCGTGCTC
GGGCTGGCGCTGATGGACGTCATCCTGCTGTCCGGACTGTTCTACTTCGGCGGTGGCACCCCGAGCGGTATCGGCAACCT
GCTGATAGTCGCCGTTGCCATCGCCAACATACTGCTGCGTGGCAGGGTCGGTTTCTTCATCGCCGCGGTTGCTGCGACGG
GCCTGATCTACCTGACCTTCTACCTCAGCATTCAACGCCCCGAAGCCAGCAGCCAGTACGTTCAGGCCAGCGCACTCGGC
ACGCTCTGCTTTGCTGCCGCCTTCCTGGTTCAGGGGCTGGCTCGCCGCCTGCAGGTCAGCGAGACGCTGGCGCGCCAGCG
TGCGGAAGAGGTGGCGAACCTGGAGGCGCTCAACGCGCTGATCCTCCAGCGCATGCGTACCGGCATCATGGTGCTGGACC
CGCAGGAGCGCGTTCTGCTCGCCAATCAGGGGGCTCTGCAACTGCTCGGCCAGGACTCGCTGGCAGGCGAACGCCTCGCA
CCCCGCTGCCCGGAACTGCTCAAGGCACTGCAACAGTGGCGAGGCAATCCGACCCTGCGCCCACCGAACCTCAGGGCAAC
GCCTGGCGGCCCAACGCTGCAGCCGAGCTTCGCCGCGCTTCAGCACGGGAACAAGCTCGACACACTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCGCAGAAGGCACAACAGCTCAAGCTCGCCTCCCTCGGACGCCTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGCCACGCCGCGCAGCTGCTTCAGGAATCCGAAGAACTGGACGGACCTGACCGCCG
TCTGGCACAGATCATTCAGGATCATTCACGGCGGATGAACCTGGTGATCGAGAACGTCCTCCAGCTTTCCCGGCGGCGCC
AGGCCGAACCCCAGCTGCTGGACCTGAAGTACTGGCTGCATCGTTTCGCCAGCGAGTTCCGCCAGGGGCTCGGCCCCCAG
CAGACCCTGCACCTGGATACCGTGGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGACCAA
CCTGGTCCAGAACGGGCTGCGCTACAGCGGCCAGCAGAATCCGCGGGCGCAGGTCTGGCTCCGCCTGTTCCGTGACGAAG
CCAGCGACCTGCCTATCGTCGAAGTGCTCGATGACGGCCCTGGTATCGCGGCCGAGCAACTACAGAACATTTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGCACCGGGCTGGGGCTATATATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGTCCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCCCACCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-240)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.226

100

0.662