Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQZ80_RS22220 Genome accession   NZ_CP102244
Coordinates   4657438..4657974 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O7:H15 strain ST70     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4652438..4662974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ80_RS22200 (NQZ80_22200) soxR 4654165..4654629 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  NQZ80_RS22205 (NQZ80_22205) soxS 4654715..4655038 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NQZ80_RS22210 (NQZ80_22210) pdeC 4655041..4656627 (-) 1587 WP_000019572.1 c-di-GMP phosphodiesterase PdeC -
  NQZ80_RS22215 (NQZ80_22215) yjcB 4657057..4657338 (+) 282 WP_001295689.1 YjcB family protein -
  NQZ80_RS22220 (NQZ80_22220) ssb 4657438..4657974 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NQZ80_RS22225 (NQZ80_22225) uvrA 4658229..4661051 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  NQZ80_RS22230 (NQZ80_22230) yjbR 4661086..4661442 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NQZ80_RS22235 (NQZ80_22235) yjbQ 4661446..4661862 (-) 417 WP_000270370.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NQZ80_RS22240 (NQZ80_22240) aphA 4661973..4662686 (-) 714 WP_001468912.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=615990 NQZ80_RS22220 WP_000168305.1 4657438..4657974(-) (ssb) [Escherichia coli O7:H15 strain ST70]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=615990 NQZ80_RS22220 WP_000168305.1 4657438..4657974(-) (ssb) [Escherichia coli O7:H15 strain ST70]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489