Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EKM74_RS01645 Genome accession   NZ_AP019306
Coordinates   319782..320384 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain TUM9463     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 314782..325384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM74_RS01625 yajC 316278..316538 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  EKM74_RS01630 tgt 316557..317696 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  EKM74_RS01635 queA 317719..318744 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EKM74_RS01640 ruvB 318746..319750 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EKM74_RS01645 ruvA 319782..320384 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  EKM74_RS01650 - 320398..320853 (-) 456 WP_000368902.1 ACT domain-containing protein -
  EKM74_RS01655 obgE 320866..322158 (-) 1293 WP_000496100.1 GTPase ObgE -
  EKM74_RS01660 rpmA 322512..322796 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  EKM74_RS01665 - 322808..323128 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  EKM74_RS01670 rplU 323134..323442 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  EKM74_RS01675 mreD 323678..324208 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  EKM74_RS01680 mreC 324208..325050 (-) 843 WP_042109203.1 rod shape-determining protein MreC -
  EKM74_RS01685 - 325249..325368 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=61599 EKM74_RS01645 WP_000271550.1 319782..320384(-) (ruvA) [Staphylococcus aureus strain TUM9463]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=61599 EKM74_RS01645 WP_000271550.1 319782..320384(-) (ruvA) [Staphylococcus aureus strain TUM9463]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43

Multiple sequence alignment