Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG312_RS07670 Genome accession   NZ_CP085221
Coordinates   1678388..1679029 (-) Length   213 a.a.
NCBI ID   WP_404299147.1    Uniprot ID   -
Organism   Halomonas sp. strain DBC-59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1673388..1684029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG312_RS07650 (LG312_07670) fabA 1674840..1675355 (+) 516 WP_379761222.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  LG312_RS07655 (LG312_07675) fabB 1675370..1676587 (+) 1218 WP_379761225.1 beta-ketoacyl-ACP synthase I -
  LG312_RS07660 (LG312_07680) - 1676697..1677461 (-) 765 WP_379761227.1 lysophospholipid acyltransferase family protein -
  LG312_RS07665 (LG312_07685) - 1677458..1678351 (-) 894 WP_379761229.1 sugar nucleotide-binding protein -
  LG312_RS07670 (LG312_07690) ssb 1678388..1679029 (-) 642 WP_404299147.1 single-stranded DNA-binding protein Machinery gene
  LG312_RS07675 (LG312_07695) - 1679144..1680532 (-) 1389 WP_379761233.1 MFS transporter -
  LG312_RS07680 (LG312_07700) uvrA 1680694..1683546 (+) 2853 WP_379761235.1 excinuclease ABC subunit UvrA -
  LG312_RS07685 (LG312_07705) rplQ 1683607..1683999 (-) 393 WP_404299150.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22978.99 Da        Isoelectric Point: 5.2221

>NTDB_id=615983 LG312_RS07670 WP_404299147.1 1678388..1679029(-) (ssb) [Halomonas sp. strain DBC-59]
MARGVNKVILIGNLGQDPEVRFLPSGAPVANLRLATTDTWMDKQSGQRQERTEWHTLVMFNKLAEIGQQYLKKGSRIYVE
GRLQTRKWQGQDGQDRYSTEIVVNDMQMLDSRSGGGDAQGGGAPQSGQYGGAPQQGGYGGQPQQQGGGYGGQPQQPAHPQ
QRPAPTPPAAQPQSGQQGNQQGNQQGNQQGNQQGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 642 bp        

>NTDB_id=615983 LG312_RS07670 WP_404299147.1 1678388..1679029(-) (ssb) [Halomonas sp. strain DBC-59]
ATGGCCCGTGGCGTCAACAAGGTCATTCTGATCGGCAACCTGGGACAAGATCCCGAGGTTCGCTTTCTACCCTCCGGGGC
CCCGGTGGCCAACCTGCGGCTTGCCACCACCGATACCTGGATGGACAAGCAGTCCGGCCAGCGCCAGGAGCGCACCGAAT
GGCACACTCTGGTGATGTTCAACAAACTGGCGGAGATCGGCCAGCAGTACCTCAAGAAGGGTTCGCGGATCTACGTCGAG
GGCCGTCTGCAGACCCGCAAATGGCAGGGGCAGGACGGCCAGGACCGCTACAGCACCGAGATTGTCGTCAACGACATGCA
GATGCTCGATTCTCGGAGTGGCGGCGGTGACGCCCAGGGCGGCGGCGCACCCCAGAGCGGCCAATACGGTGGTGCTCCTC
AGCAGGGAGGCTATGGCGGTCAGCCCCAGCAGCAGGGCGGTGGCTATGGTGGTCAGCCCCAGCAGCCGGCTCACCCTCAG
CAGCGTCCTGCTCCGACCCCGCCGGCAGCGCAGCCACAGAGCGGTCAGCAGGGCAACCAGCAGGGCAACCAGCAGGGCAA
CCAGCAGGGCAACCAGCAGGGCAACTATGGGGCGCCGGATCCGGGCAGCTTCGACGACTTTGATGACGAGATTCCGTTCT
AG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.945

100

0.493
  ssb Glaesserella parasuis strain SC1401

44.037

100

0.451
  ssb Neisseria meningitidis MC58

43.868

99.531

0.437
  ssb Neisseria gonorrhoeae MS11

42.381

98.592

0.418