Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG327_RS07730 Genome accession   NZ_CP085217
Coordinates   1641015..1641539 (+) Length   174 a.a.
NCBI ID   WP_404368049.1    Uniprot ID   -
Organism   Marinobacter sp. strain QJJ-212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1636015..1646539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG327_RS07720 (LG327_07720) uvrA 1636565..1639384 (-) 2820 WP_404368043.1 excinuclease ABC subunit UvrA -
  LG327_RS07725 (LG327_07725) - 1639525..1640895 (+) 1371 WP_404368046.1 MFS transporter -
  LG327_RS07730 (LG327_07730) ssb 1641015..1641539 (+) 525 WP_404368049.1 single-stranded DNA-binding protein Machinery gene
  LG327_RS07735 (LG327_07735) - 1641749..1643131 (-) 1383 WP_404368052.1 sodium-dependent transporter -
  LG327_RS07740 (LG327_07740) - 1643208..1644398 (-) 1191 WP_404368054.1 aromatic amino acid transaminase -
  LG327_RS07745 (LG327_07745) - 1644573..1645046 (+) 474 WP_404368057.1 Lrp/AsnC family transcriptional regulator -
  LG327_RS07750 (LG327_07750) - 1645107..1645607 (-) 501 WP_404368060.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18731.76 Da        Isoelectric Point: 4.9557

>NTDB_id=615945 LG327_RS07730 WP_404368049.1 1641015..1641539(+) (ssb) [Marinobacter sp. strain QJJ-212]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWTNKEGQDVYTTEVVVDINGQMQMLDSKGGDSAGSNQGAPAGRPQQAASAGQTQQGKGSDSGGYSPAPQGQGP
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=615945 LG327_RS07730 WP_404368049.1 1641015..1641539(+) (ssb) [Marinobacter sp. strain QJJ-212]
ATGGCACGAGGCGTCAACAAAGTTATCCTGATCGGCAATCTGGGGCAGGACCCGGACACCCGTTACACCCCGAATGGCAA
TGCAGTGGTCAACCTCAACCTGGCCACAGACGAGAGCTACAAGGATCGGCAGACCGGACAGATGGTCCCGAAGACCGAAT
GGCATCGCATTGTGATGTTCGGCAAGATTGCGGAAGTGGCGGGCCAGTATCTCCGGAAAGGCTCCAAGGTCTACATCGAG
GGCAAACTACAGACCCGCAAGTGGACCAACAAGGAAGGGCAGGACGTTTACACCACGGAAGTGGTTGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCAAGGGTGGAGACTCCGCCGGCAGTAATCAGGGCGCGCCGGCTGGCCGGCCCCAGCAGG
CAGCAAGTGCTGGTCAGACCCAGCAGGGCAAGGGTTCAGATTCCGGTGGTTACAGCCCGGCGCCCCAAGGTCAGGGTCCA
ATGCCTGAGCCCGTGGACGACTTCGACGACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.514

100

0.569
  ssb Vibrio cholerae strain A1552

55.114

100

0.557
  ssb Neisseria meningitidis MC58

43.75

100

0.443
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.437